Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1513 ATGGCATCATCTAGTCAAATCGGTTCGCTTCGAGAACCCGACCCGATCCAGTATTACCATTACCCAGACAGAAATTATGCAAGACGCAAAAAACCTCTGGATTTATTTTATTGGAATTTTAAGTGTTTAGGGATTCCGCAACCCTTTTGCACTCCTCGGAGCTCAAACCGGGACAGCATTTCGCCGGAATTTCCATTGAAGGCGGTGGTCGTCGACCTAGAATCACATAATATCCCTACAACTGTAAGTTCTTTTACTGGCGAACATTCTTGCTCTTCTTCAAGCTTTTCATTATCTTGCCTAAGCCGATGCAATTGGAGCCAGTGTACTTGCTGGTTTTCTAGTACAGGACGCTTCAAAGTTGTCATCGGTTTATTAATTTGGAACAGTTTTTCCCTGTTAGTAGCAGGAATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTTTGTCAAGTCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAGGTTCTCGTTCGCAAAATCAATCCTTGAAATTGTCTCCTGGCTACGCTGTCTTTCGTGTGCTCTTTCCCGTTTCCAGAATTGGCAGCCTTGTAGGTAAAGATGGGGACGCTTTATCTAAAATTCGGGAAGAAACAGGTGTAGAAATCAGAGTAGAGGACGCTGTTCCTGGATGTGATGAGAGAATAGTAATAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACACTGAGCAGAAGAGTAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGATGATGATATTGCCAAGTCGAAAAAGAAGGAAGATAAAGATTCTCCTCCTGTGGAAGATGCTAAACAGAAGGAGGTTTCTCATTTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAAATCTTTGATGAAGAACCGGAGGCAGATGGGACATCTGTTGAAGGTGATAAGACATTTGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGCTTGCAACGACTAATAATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCCAATGATAAAGATCCTGTTGCCTTAAGCAATGCTGCACAGTCATCACATTCTTCTGGACTGTCTCTCTCTAGGGCTCATGAATCTCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGCAATTCTCATTTCAGTGCACCTTCTCTTGCTCCTAAACAGTATGAAAGCAGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTGAGTTATCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTAGTTAAGACTCTTCAGCAAGACACGGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGACGACAGAATATCACCAGTGCAAGACGCTGTTTTTCGTGTTCAGGCCAGGATTGTCAAAGCTGTACCAGAGGGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGATTCCAAAGTGTGCTGGGGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACAGTTCAAGATGCCATGTTGCAGATTACTACTCGGCTAAGGCATCATTTTTTCCGTGATGCATTTCCATCAGTTAATAGTCATCCGAATCCTGCATTCATAGATAGACTTCCTTCATTTCCATCATATTTTGGAAGGAGAGAATTATCACCTCCAGGAATTTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGGGATGATCGACCTCCTTTTCTTCATAGGTCAGGTGCTCCTCTGTTATCTGATAGAAAGCCATGGAACTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGACTTTGCAGGAGCCCATCATAGAAGACTTGGTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTTGTCCCTGTCATTTGTGGAGAAAATGGTGAATGTTTGAAACAGATTCGACAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAAGGAGAAGTTGAAACTATGATTATAATTTCTGGAACGCCTGAGCAGACCCATGCTGCCCAGAGTCTTATTCAAGCTTTTGTATACGACGACTACTTTCTTATCTCTGGGCTGATTGTTTTGGAGAAAGGATGTTGA 2511 42.81 MASSSQIGSLREPDPIQYYHYPDRNYARRKKPLDLFYWNFKCLGIPQPFCTPRSSNRDSISPEFPLKAVVVDLESHNIPTTVSSFTGEHSCSSSSFSLSCLSRCNWSQCTCWFSSTGRFKVVIGLLIWNSFSLLVAGMSAPLTPSKRSRDRSFVKSNGKGKWQKSSGSRSQNQSLKLSPGYAVFRVLFPVSRIGSLVGKDGDALSKIREETGVEIRVEDAVPGCDERIVIIGGSNQETEVNTEQKSKEDNKNSEVEENDDDIAKSKKKEDKDSPPVEDAKQKEVSHLRKALFLVSEKIFDEEPEADGTSVEGDKTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPLATTNNELVQISGGIDVVKKALELVFQQLMENSPNDKDPVALSNAAQSSHSSGLSLSRAHESPLGSSSFNTHGGPYSVPRDVGNSHFSAPSLAPKQYESSIPGRSKPSHEILSYRLLCPSERVGNVIGKGGAVVKTLQQDTGCDIKVVEGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAVPEGKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMLQITTRLRHHFFRDAFPSVNSHPNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRPPFLHRSGAPLLSDRKPWNSQGLVEGGVGLSDFAGAHHRRLGGFGGGNNPAIITSTTVEVVVPRNLVPVICGENGECLKQIRQISDAKITITEPKQGEVETMIIISGTPEQTHAAQSLIQAFVYDDYFLISGLIVLEKGC 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28005464 28010541 - CaPI482276_11g015130.1 Cam11g1513 140435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1513 836 Gene3D K Homology domain, type 1 470 548 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 ProSiteProfiles Type-1 KH domain profile. 315 384 - -
Cam11g1513 836 SMART kh_6 180 250 IPR004087 GO:0003676(InterPro)
Cam11g1513 836 SMART kh_6 469 549 IPR004087 GO:0003676(InterPro)
Cam11g1513 836 SMART kh_6 314 389 IPR004087 GO:0003676(InterPro)
Cam11g1513 836 SMART kh_6 750 820 IPR004087 GO:0003676(InterPro)
Cam11g1513 836 SMART kh_6 554 629 IPR004087 GO:0003676(InterPro)
Cam11g1513 836 MobiDBLite consensus disorder prediction 395 433 - -
Cam11g1513 836 CDD KH-I_PEPPER_rpt2_like 557 629 - -
Cam11g1513 836 ProSiteProfiles Type-1 KH domain profile. 181 247 - -
Cam11g1513 836 CDD KH-I_PEPPER_rpt2_like 317 388 - -
Cam11g1513 836 MobiDBLite consensus disorder prediction 158 174 - -
Cam11g1513 836 Gene3D K Homology domain, type 1 749 824 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 Gene3D K Homology domain, type 1 182 244 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 748 821 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 472 547 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 CDD KH-I_PEPPER_rpt1_like 473 538 - -
Cam11g1513 836 MobiDBLite consensus disorder prediction 395 464 - -
Cam11g1513 836 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 236 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 MobiDBLite consensus disorder prediction 232 283 - -
Cam11g1513 836 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 551 635 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 ProSiteProfiles Type-1 KH domain profile. 470 537 - -
Cam11g1513 836 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 309 390 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 ProSiteProfiles Type-1 KH domain profile. 555 624 - -
Cam11g1513 836 MobiDBLite consensus disorder prediction 241 283 - -
Cam11g1513 836 Gene3D K Homology domain, type 1 313 392 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 Gene3D K Homology domain, type 1 552 632 IPR036612 GO:0003723(InterPro)
Cam11g1513 836 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 744 819 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cam11g1513 836 Pfam KH domain 318 384 IPR004088 GO:0003723(InterPro)
Cam11g1513 836 Pfam KH domain 473 524 IPR004088 GO:0003723(InterPro)
Cam11g1513 836 Pfam KH domain 753 816 IPR004088 GO:0003723(InterPro)
Cam11g1513 836 Pfam KH domain 184 237 IPR004088 GO:0003723(InterPro)
Cam11g1513 836 Pfam KH domain 558 624 IPR004088 GO:0003723(InterPro)
Cam11g1513 836 ProSiteProfiles Type-1 KH domain profile. 751 815 - -
Cam11g1513 836 MobiDBLite consensus disorder prediction 143 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1513 K21444 - - csv:101221201 1206.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1568 Cam-Chr9:26440016 Cam11g1513 Cam-Chr11:28005464 9.50E-80 dispersed
Cam11g1201 Cam-Chr11:23851637 Cam11g1513 Cam-Chr11:28005464 5.10E-27 dispersed
Cam11g1513 Cam-Chr11:28005464 Cam09g1861 Cam-Chr9:33146754 2.70E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201