Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1523 ATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCTATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACCAAGTACATGATTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTAGGTGCATTTGTAGTCAGCTACTGA 375 48.0 MSWQPYVDEHLMCDIGGYRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLAPTGLFHGGTKYMIIQGEPGAVIRGKKGGGGITIKKTNLVQHDRRKARRLPDRAGTVGAFVVSY 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28062703 28064367 + CaPI482276_11g015230.1 Cam11g1523 140445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1523 124 Pfam Profilin 1 98 IPR048278 GO:0003779(InterPro)
Cam11g1523 124 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cam11g1523 124 CDD PROF 2 82 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PANTHER PROFILIN 1 98 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cam11g1523 124 Gene3D Dynein light chain 2a, cytoplasmic 1 101 - -
Cam11g1523 124 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 SMART prof_2 1 119 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 SUPERFAMILY Profilin (actin-binding protein) 2 99 IPR036140 -
Cam11g1523 124 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1523 K05759 - - sly:543830 157.147
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0212 Cam-Chr11:3658864 Cam11g1523 Cam-Chr11:28062703 2.10E-39 dispersed
Cam11g0213 Cam-Chr11:3662268 Cam11g1523 Cam-Chr11:28062703 1.10E-39 dispersed
Cam11g1523 Cam-Chr11:28062703 Cam09g0024 Cam-Chr9:1200515 3.80E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 9.8e-215 742.7
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.7e-214 740.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.5e-210 726.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT2G19760 72.1 8.6e-49 189.9
Cam11g1523 . 1 98 Cytoskeleton Gene Families AT2G19760 73.5 8.1e-39 156.8
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT4G29350 72.1 9.5e-48 186.4
Cam11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cam11g0213 . 1 130 Cytoskeleton Gene Families AT4G29340 61.2 4.2e-43 171.0
Cam11g1523 . 1 97 Cytoskeleton Gene Families AT4G29340 72.0 7.0e-38 153.7