Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1523 ATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCTATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACCAAGTACATGATTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTAGGTGCATTTGTAGTCAGCTACTGA 375 48.0 MSWQPYVDEHLMCDIGGYRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLAPTGLFHGGTKYMIIQGEPGAVIRGKKGGGGITIKKTNLVQHDRRKARRLPDRAGTVGAFVVSY 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28062703 28064367 + CaPI482276_11g015230.1 Cam11g1523 140445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1523 124 Pfam Profilin 1 98 IPR048278 GO:0003779(InterPro)
Cam11g1523 124 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cam11g1523 124 CDD PROF 2 82 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PANTHER PROFILIN 1 98 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cam11g1523 124 Gene3D Dynein light chain 2a, cytoplasmic 1 101 - -
Cam11g1523 124 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 SMART prof_2 1 119 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 SUPERFAMILY Profilin (actin-binding protein) 2 99 IPR036140 -
Cam11g1523 124 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cam11g1523 124 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0212 Cam-Chr11:3658864 Cam11g1523 Cam-Chr11:28062703 2.10E-39 dispersed
Cam11g0213 Cam-Chr11:3662268 Cam11g1523 Cam-Chr11:28062703 1.10E-39 dispersed
Cam11g1523 Cam-Chr11:28062703 Cam09g0024 Cam-Chr9:1200515 3.80E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1523 K05759 - sly:543830 157.147