Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1533 | ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAATCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATCGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTCGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGTTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACTGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG | 1053 | 51.09 | MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTFDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28166990 | 28168170 | + | CaPI482276_11g015330.1 | Cam11g1533 | 140455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1533 | 350 | MobiDBLite | consensus disorder prediction | 216 | 242 | - | - | |
Cam11g1533 | 350 | Pfam | GATA zinc finger | 246 | 280 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g1533 | 350 | ProSiteProfiles | GATA-type zinc finger domain profile. | 240 | 276 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g1533 | 350 | CDD | ZnF_GATA | 245 | 292 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g1533 | 350 | PANTHER | GATA TRANSCRIPTION FACTOR | 39 | 312 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Cam11g1533 | 350 | MobiDBLite | consensus disorder prediction | 144 | 182 | - | - | |
Cam11g1533 | 350 | ProSitePatterns | GATA-type zinc finger domain. | 246 | 271 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g1533 | 350 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 241 | 304 | - | - | |
Cam11g1533 | 350 | FunFam | GATA transcription factor | 236 | 322 | - | - | |
Cam11g1533 | 350 | SMART | GATA_3 | 240 | 290 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam11g1533 | 350 | Gene3D | - | 241 | 325 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cam11g1533 | 350 | PIRSF | Txn_fac_GATA_plant | 22 | 336 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Cam11g1533 | 350 | MobiDBLite | consensus disorder prediction | 155 | 171 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0556 | Cam-Chr1:5931245 | Cam11g1533 | Cam-Chr11:28166990 | 5.30E-08 | dispersed | |
Cam07g1241 | Cam-Chr7:26807180 | Cam11g1533 | Cam-Chr11:28166990 | 1.20E-67 | dispersed | |
Cam08g1202 | Cam-Chr8:18339778 | Cam11g1533 | Cam-Chr11:28166990 | 6.40E-42 | dispersed | |
Cam10g1345 | Cam-Chr10:26990177 | Cam11g1533 | Cam-Chr11:28166990 | 9.50E-29 | dispersed | |
Cam11g0414 | Cam-Chr11:5563017 | Cam11g1533 | Cam-Chr11:28166990 | 1.80E-31 | dispersed | |
Cam11g1533 | Cam-Chr11:28166990 | Cam08g1671 | Cam-Chr8:22955097 | 1.10E-82 | wgd | |
Cam11g1533 | Cam-Chr11:28166990 | Cam09g0008 | Cam-Chr9:1040706 | 2.00E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52928 | PF00320 | GATA | 3.20E-15 | CL0167 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1533 | - | - | - | 0.0 |