Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1533 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAATCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATCGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTCGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGTTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACTGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.09 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTFDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28166990 28168170 + CaPI482276_11g015330.1 Cam11g1533 140455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1533 350 MobiDBLite consensus disorder prediction 216 242 - -
Cam11g1533 350 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g1533 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g1533 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g1533 350 PANTHER GATA TRANSCRIPTION FACTOR 39 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cam11g1533 350 MobiDBLite consensus disorder prediction 144 182 - -
Cam11g1533 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g1533 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Cam11g1533 350 FunFam GATA transcription factor 236 322 - -
Cam11g1533 350 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam11g1533 350 Gene3D - 241 325 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam11g1533 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cam11g1533 350 MobiDBLite consensus disorder prediction 155 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1533 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0556 Cam-Chr1:5931245 Cam11g1533 Cam-Chr11:28166990 5.30E-08 dispersed
Cam07g1241 Cam-Chr7:26807180 Cam11g1533 Cam-Chr11:28166990 1.20E-67 dispersed
Cam08g1202 Cam-Chr8:18339778 Cam11g1533 Cam-Chr11:28166990 6.40E-42 dispersed
Cam10g1345 Cam-Chr10:26990177 Cam11g1533 Cam-Chr11:28166990 9.50E-29 dispersed
Cam11g0414 Cam-Chr11:5563017 Cam11g1533 Cam-Chr11:28166990 1.80E-31 dispersed
Cam11g1533 Cam-Chr11:28166990 Cam08g1671 Cam-Chr8:22955097 1.10E-82 wgd
Cam11g1533 Cam-Chr11:28166990 Cam09g0008 Cam-Chr9:1040706 2.00E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1671 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.4e-69 257.7
Cam11g1533 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 7.9e-67 251.1
Cam07g1241 . 96 287 C2C2-Gata Transcription Factor Family AT3G60530 50.5 6.2e-45 177.9
Cam01g2046 . 105 281 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.3e-42 167.5
Cam10g0224 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.1 3.2e-139 492.3
Cam09g1283 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.3 5.6e-136 481.5
Cam10g0224 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 6.1e-121 431.4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52928 PF00320 GATA 3.20E-15 CL0167 Cam TF