Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1537 | ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCCCCTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA | 657 | 53.42 | MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28196751 | 28197407 | - | CaPI482276_11g015370.1 | Cam11g1537 | 140459 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1537 | 218 | Gene3D | AP2/ERF domain | 34 | 92 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1537 | 218 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 16 | 176 | IPR051032 | - | |
Cam11g1537 | 218 | Pfam | AP2 domain | 34 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1537 | 218 | MobiDBLite | consensus disorder prediction | 125 | 144 | - | - | |
Cam11g1537 | 218 | SUPERFAMILY | DNA-binding domain | 34 | 92 | IPR016177 | GO:0003677(InterPro) | |
Cam11g1537 | 218 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1537 | 218 | CDD | AP2 | 35 | 93 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1537 | 218 | FunFam | Ethylene-responsive transcription factor 2 | 33 | 92 | - | - | |
Cam11g1537 | 218 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1537 | 218 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1537 | 218 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1537 | 218 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cam11g1537 | 218 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cam11g1537 | 218 | MobiDBLite | consensus disorder prediction | 124 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam10g1889 | Cam-Chr10:32980969 | Cam11g1537 | Cam-Chr11:28196751 | 2.80E-22 | dispersed | |
Cam10g1890 | Cam-Chr10:32989857 | Cam11g1537 | Cam-Chr11:28196751 | 1.30E-26 | dispersed | |
Cam11g1537 | Cam-Chr11:28196751 | Cam11g1588 | Cam-Chr11:28617496 | 6.20E-20 | dispersed | |
Cam06g0978 | Cam-Chr6:14925412 | Cam11g1537 | Cam-Chr11:28196751 | 9.80E-49 | transposed | |
Cam08g0179 | Cam-Chr8:3706552 | Cam11g1537 | Cam-Chr11:28196751 | 2.10E-22 | transposed | |
Cam09g0177 | Cam-Chr9:2557370 | Cam11g1537 | Cam-Chr11:28196751 | 2.30E-40 | transposed | |
Cam10g0245 | Cam-Chr10:4262981 | Cam11g1537 | Cam-Chr11:28196751 | 7.60E-37 | transposed | |
Cam11g0326 | Cam-Chr11:4794562 | Cam11g1537 | Cam-Chr11:28196751 | 3.10E-39 | transposed | |
Cam11g1537 | Cam-Chr11:28196751 | Cam08g1682 | Cam-Chr8:23102991 | 4.90E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52929 | PF00847 | AP2 | 8.20E-14 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1537 | K09286 | - | csv:101217333 | 276.559 |