Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1537 ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCCCCTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA 657 53.42 MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSPSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28196751 28197407 - CaPI482276_11g015370.1 Cam11g1537 140459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1537 218 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1537 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 176 IPR051032 -
Cam11g1537 218 Pfam AP2 domain 34 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1537 218 MobiDBLite consensus disorder prediction 125 144 - -
Cam11g1537 218 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677(InterPro)
Cam11g1537 218 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1537 218 CDD AP2 35 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1537 218 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Cam11g1537 218 SMART rav1_2 34 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1537 218 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1537 218 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1537 218 MobiDBLite consensus disorder prediction 1 23 - -
Cam11g1537 218 MobiDBLite consensus disorder prediction 1 35 - -
Cam11g1537 218 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1889 Cam-Chr10:32980969 Cam11g1537 Cam-Chr11:28196751 2.80E-22 dispersed
Cam10g1890 Cam-Chr10:32989857 Cam11g1537 Cam-Chr11:28196751 1.30E-26 dispersed
Cam11g1537 Cam-Chr11:28196751 Cam11g1588 Cam-Chr11:28617496 6.20E-20 dispersed
Cam06g0978 Cam-Chr6:14925412 Cam11g1537 Cam-Chr11:28196751 9.80E-49 transposed
Cam08g0179 Cam-Chr8:3706552 Cam11g1537 Cam-Chr11:28196751 2.10E-22 transposed
Cam09g0177 Cam-Chr9:2557370 Cam11g1537 Cam-Chr11:28196751 2.30E-40 transposed
Cam10g0245 Cam-Chr10:4262981 Cam11g1537 Cam-Chr11:28196751 7.60E-37 transposed
Cam11g0326 Cam-Chr11:4794562 Cam11g1537 Cam-Chr11:28196751 3.10E-39 transposed
Cam11g1537 Cam-Chr11:28196751 Cam08g1682 Cam-Chr8:23102991 4.90E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52929 PF00847 AP2 8.20E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1537 K09286 - csv:101217333 276.559