Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1554 ATGAGAGGGATTTTCCAGCCACGATGCAAATGGTTGAAGAAATCCTCTGTTCATTCATTACCCACAAACACCACCGAAAATGTCAGCTTAAAAGTACCCAAAATTGATTACCCAACAAGGCAAAATCGGACCTCTGTTTCCGACGATGCACCAACAGCAAGAAATTCAGTGGAACAAGATCAAAAGACCTCAAAAAAGCCAACTTTAGAGCAACCAAGGCCTTCAATTTCTCAACAAAAGAATCAAAGCAGGAGGCCTTCCGATGCTGCAAGAAGCTCCACATCGTCTTCCAATGGCTCTGCACAAGCCAGAGCGATGAATTCTCATCAACAGTTGAACGAACACAAACCCCACATCCGATTATCTTTAAGTAATGGAGCGGTTTTGGGTAATTTGAAGCAAGCTGGAAGTGGGAATTTGTCGGCAAACAATAGTCCAAGGCTGAAAGAGATGAACTCAAGTCCAAAACTTGGAGGGAGTAGTACTGGTAGTAACAACATGGGGAACATTATTCGGAGAAATTCATGTGAATTTCGACAGATTCAAGGGTTGAGAGGTAGATTAGAGCCGGATGTTTTGAAGTCCATGGGAAATGAAGCTTACAAAAAGGGGAATTATGAAGAAGCATTGGCTTTATATGACAGAGCAATAGATTTGGATTCAGAGAATGCTGTTTATTATAGCAACAAAGGGGCTGCTTTGATTGCCTTAGATCGTTTGATGGAAGCCATTGAAGAATGCAAAAAGGCATTAAAGATTCAGCCTTCTTATCAAAGAGCCCATCATCGCCTCGCCACTACTTATCTCAGAATTGGAGAGCCTGAGAAAGCATTGGATCACATGGAACAATCTGGCCCATACAGTGATATAAACGACATCAACAAAGCTCGTACACTTCAGAGTTGTCTGAGTAGGTGTAATGAAGCAAGAAAGTTACAAGAATGGGAAACTCTGTTAAAGGAAACCCAATATGCAATTTCCTCTGTTTCCAATTCAGCTTATAAACTCTATGCTTTGCAAGCTGAGGCCTTATTGAAACTCCATAGACATCAAGAGGCATATGCCATTTACCAAAAGGGTCGAACCCTTAGAACTAATTCTTTAATTAAGTCGTTTAGTCTATCTGATAGTGCCCTTCTTTTATCCATTGAGGCACAAGTTTACTTGACCATGGGCAGATTTGAGGAAGCAGTGGCAGCAGCAGAACAATCAACACAACTTGATCCAACCAACAGAGAAGCAAGTAGAGTTGCAAAATGGGCTAAAGTTGTTTCATCAGCTCGATTAAGAGGCAATCTACTTTTCAAGGAATCAAGATTCACTGAAGCCTGTATTGCATATAGTGAAGGACTAGAAAACGACCCATATAACTCGATTTTGTTATGCAATCGAGCCGCTTGTCGATCGAAGCTTGGCCAATATGAGAAAGCTGTTGAAGATTGTACTGCTGCTCTTCACGCACAGCCATCTTACAGCAAAGCCAGACTCCGCAGGGCTGATTGCAATGCTAAAATGGAAAGATGGGAGGCATCAATTCAAGATTATGAAGTTTTGATAAGAGAAACACCAGGAAATGAAGAAGTAGGGAGAGCTCTTTTTGAGGCACAGCTTCAACTCAGAAAGCAACATGGGGAAGATGTCAAAGACTTGAAATTTGGCTCCAATTTAGTGTCTATTTCTAGCTATGAGCGTTTTAGGCATCTTGTCACTTCTCCTGGGATGTCTGTGGTTTTGTTCTGCAATAAAGGCAACCAAAAACAAGGGATAGAAGTGTTTGAGCAAGTTTACAAGAGGTTTCCATCAGTTAACTTTCTCAAGGTGGAGATAGAAGATCATCCTTATTTGGCAAAGTTGGAGAATGTGAGCTCTATTCCAGCTTTTAAAATATATAGAAATGGGACAATAGTGAAGGAGATTCCAGCTTCCAAACCACATTCATTAGAAAGTTTAGTGAAGTTGTACAGCAGTTGA 1971 40.99 MRGIFQPRCKWLKKSSVHSLPTNTTENVSLKVPKIDYPTRQNRTSVSDDAPTARNSVEQDQKTSKKPTLEQPRPSISQQKNQSRRPSDAARSSTSSSNGSAQARAMNSHQQLNEHKPHIRLSLSNGAVLGNLKQAGSGNLSANNSPRLKEMNSSPKLGGSSTGSNNMGNIIRRNSCEFRQIQGLRGRLEPDVLKSMGNEAYKKGNYEEALALYDRAIDLDSENAVYYSNKGAALIALDRLMEAIEECKKALKIQPSYQRAHHRLATTYLRIGEPEKALDHMEQSGPYSDINDINKARTLQSCLSRCNEARKLQEWETLLKETQYAISSVSNSAYKLYALQAEALLKLHRHQEAYAIYQKGRTLRTNSLIKSFSLSDSALLLSIEAQVYLTMGRFEEAVAAAEQSTQLDPTNREASRVAKWAKVVSSARLRGNLLFKESRFTEACIAYSEGLENDPYNSILLCNRAACRSKLGQYEKAVEDCTAALHAQPSYSKARLRRADCNAKMERWEASIQDYEVLIRETPGNEEVGRALFEAQLQLRKQHGEDVKDLKFGSNLVSISSYERFRHLVTSPGMSVVLFCNKGNQKQGIEVFEQVYKRFPSVNFLKVEIEDHPYLAKLENVSSIPAFKIYRNGTIVKEIPASKPHSLESLVKLYSS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28351347 28353732 + CaPI482276_11g015540.1 Cam11g1554 140476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1554 656 CDD TRX_family 563 652 - -
Cam11g1554 656 Pfam Tetratricopeptide repeat 385 411 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SUPERFAMILY TPR-like 190 414 IPR011990 GO:0005515(InterPro)
Cam11g1554 656 Gene3D Tetratricopeptide repeat domain 189 544 IPR011990 GO:0005515(InterPro)
Cam11g1554 656 SUPERFAMILY Thioredoxin-like 547 643 IPR036249 -
Cam11g1554 656 MobiDBLite consensus disorder prediction 15 113 - -
Cam11g1554 656 MobiDBLite consensus disorder prediction 68 110 - -
Cam11g1554 656 Pfam TPR repeat 197 234 - -
Cam11g1554 656 MobiDBLite consensus disorder prediction 134 168 - -
Cam11g1554 656 SUPERFAMILY TPR-like 427 542 IPR011990 GO:0005515(InterPro)
Cam11g1554 656 ProSiteProfiles TPR repeat profile. 378 411 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SMART tpr_5 190 223 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SMART tpr_5 378 411 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SMART tpr_5 224 257 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SMART tpr_5 424 457 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SMART tpr_5 334 367 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SMART tpr_5 492 525 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 SMART tpr_5 458 491 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 41 647 IPR044534 GO:0005737(PANTHER)
Cam11g1554 656 ProSiteProfiles TPR repeat region circular profile. 190 223 - -
Cam11g1554 656 ProSiteProfiles TPR repeat profile. 190 223 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515(InterPro)
Cam11g1554 656 Pfam Tetratricopeptide repeat 470 525 - -
Cam11g1554 656 MobiDBLite consensus disorder prediction 16 30 - -
Cam11g1554 656 MobiDBLite consensus disorder prediction 38 58 - -
Cam11g1554 656 Gene3D Glutaredoxin 550 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1554 K09527 - - csv:101206173 1097.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0980 Cam-Chr7:23895583 Cam11g1554 Cam-Chr11:28351347 2.10E-99 dispersed
Cam11g1554 Cam-Chr11:28351347 Cam11g1785 Cam-Chr11:30333930 4.30E-101 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929