Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1556 ATGCAATTGGATTCGTTAAGGCTCTTTTCTGGTCCTCAGAAAAAGAAAACAATATATATCAGTAAAGCAACCAAAAGTGATAAATTGACTGTAAAAATGAGTGACAAGAGAGAGAATTCAGCTGATGAGGAAGTTGAAACAAAAGAGATGGATGATAGAAGTTTGACTCCAGATAATCAACCACAGGATGAGCGATACATTCACAAAGTTGGGGTTCCACCCAAGCAAAAACTCTACAAAGAAATCAAATCTGCAGTGAAAGAAACATTTTTCCCGGATGATCCTCTCCGTTCATTCAAGGATCAAACTAAGAGGCGGAAATTTATTCTCGGGGTCCAAGCCGTTTTTCCGATTCTTGATTGGGGAAGAACTTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACAATTGCTAGTCTTTGCATTCCACAGGATATTGGGTATGCCAAGCTTGCGAATTTGCCTCCAGAGTACGGTTTGTACTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACGCTGCTTCAAGCGGAAATCGATTCTGCTGCAAATCCAGAAGACTACAGGCGGCTGGCATTTACAGCTACATTCTTTGCGGGGATCACACAAGCCACCCTTGGAGTTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATCAAGAAATTCACAAAGAAAACAGATATTATCTCTGTTATGCAGTCAGTATTTGGCACAATCCGACACGGATGGAACTGGCAGACAATAGTGATTGCTGTAGCCTTCCTTGGCTTCCTTCTATTTGCAAAATTCATTGGGAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTTGTACTGTCTACCATTTTGGTATACATCACTCGTGCAGATAAGGAAGGAGTTGCAATTGTGAAACACATAGAGAAAGGAATCAATCCCCCATCTGTGAAAGACTTATATTTATCAGGCCAATACCTTCCAAAAGGGTTGAAGATCGGTATTGTGGCGGGAATGGTAGCACTGACGGAAGCCGTTGCAATTGGAAGAACGTTTGCTTCAATGAAAGACTATCAAATAGATGGGAACAAGGAAATGGTAGCAATGGGACTCATGAATGTTGTTGGTTCAACGACTTCCTGCTATGTAACAACAGGATCATTCTCTAGATCCGCCGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCTATTGTAGTACTCCTAACTTTGGCATTCCTCACCCCATTGTTCAAATATACTCCAAATGCAATTCTGTCCGCTATCATCATATCCGCTGTGATCAACCTGGTCGACTTGCATGCTGCGAAACTGATTTGGAAGATAGATAAATTCGATTTTGTTGCTTGTATGGGAGCCTTCCTTGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTATTGCGGTATCCATTTCCTTTGCCAAAATCCTTCTACAAGTTACCAGGCCAAGGACTGCAATTCTTGGAAAGATCCCGAGGACGACTGTTTACCGAAACATACTGCAATATCCTGAAGCAACCCAGGTTCCAGGGGTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTCGATGAGGAAGAACAAACGAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGATACTAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGTCTCAAGAAGAGAGAAATTCAGCTCATTTTAGCAAATCCGGGGCCCGTGGTGATCAACAAACTCCACGCATCGGAATTTGTAGATTTGATAGGCCAAGACCATATCTTCCTCACAGTTGCAGATGCAGTCTCATCTTGTAGTCCAAAGATAATGAACGACGTTTGA 2082 42.07 MQLDSLRLFSGPQKKKTIYISKATKSDKLTVKMSDKRENSADEEVETKEMDDRSLTPDNQPQDERYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKRRKFILGVQAVFPILDWGRTYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQAEIDSAANPEDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMQSVFGTIRHGWNWQTIVIAVAFLGFLLFAKFIGKKNKRLFWVPAIAPLISVVLSTILVYITRADKEGVAIVKHIEKGINPPSVKDLYLSGQYLPKGLKIGIVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGLMNVVGSTTSCYVTTGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFLTPLFKYTPNAILSAIIISAVINLVDLHAAKLIWKIDKFDFVACMGAFLGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNILQYPEATQVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVINKLHASEFVDLIGQDHIFLTVADAVSSCSPKIMNDV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28362295 28366001 + CaPI482276_11g015560.1 Cam11g1556 140478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1556 693 ProSitePatterns SLC26A transporters signature. 159 180 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cam11g1556 693 Pfam Sulfate permease family 130 511 IPR011547 GO:0016020(InterPro)
Cam11g1556 693 PANTHER SULFATE TRANSPORTER 86 685 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam11g1556 693 CDD STAS_SulP_like_sulfate_transporter 563 678 - -
Cam11g1556 693 ProSiteProfiles STAS domain profile. 562 685 IPR002645 -
Cam11g1556 693 NCBIfam sulfate permease 117 681 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam11g1556 693 Gene3D STAS domain 542 688 IPR036513 -
Cam11g1556 693 Coils Coil 598 618 - -
Cam11g1556 693 FunFam Sulfate transporter 31 542 688 - -
Cam11g1556 693 Pfam STAS domain 563 681 IPR002645 -
Cam11g1556 693 MobiDBLite consensus disorder prediction 31 64 - -
Cam11g1556 693 SUPERFAMILY SpoIIaa-like 564 686 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0913 Cam-Chr3:11775774 Cam11g1556 Cam-Chr11:28362295 1.30E-302 dispersed
Cam07g0973 Cam-Chr7:23666663 Cam11g1556 Cam-Chr11:28362295 6.10E-180 dispersed
Cam09g0713 Cam-Chr9:7098159 Cam11g1556 Cam-Chr11:28362295 7.30E-205 dispersed
Cam11g0135 Cam-Chr11:2973139 Cam11g1556 Cam-Chr11:28362295 3.10E-187 dispersed
Cam09g1672 Cam-Chr9:29024442 Cam11g1556 Cam-Chr11:28362295 1.10E-248 transposed
Cam09g2060 Cam-Chr9:35175933 Cam11g1556 Cam-Chr11:28362295 4.50E-107 transposed
Cam11g1556 Cam-Chr11:28362295 Cam03g0910 Cam-Chr3:11733714 4.30E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1556 K17470 - csv:101207370 1196.8