Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1563 ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGGTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAACTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGCGGGAACAACAGCTGTGAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGAAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA 1095 47.49 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSWYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAAGTTAVKVENSSSRAVTESDGSEASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28432388 28433482 + CaPI482276_11g015630.1 Cam11g1563 140485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1563 364 CDD AP2 179 239 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1563 364 ProSiteProfiles AP2/ERF domain profile. 180 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1563 364 MobiDBLite consensus disorder prediction 287 333 - -
Cam11g1563 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 362 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cam11g1563 364 FunFam Ethylene-responsive transcription factor 2 179 238 - -
Cam11g1563 364 SMART rav1_2 180 243 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1563 364 PRINTS Ethylene responsive element binding protein signature 203 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1563 364 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1563 364 Pfam AP2 domain 180 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1563 364 Gene3D AP2/ERF domain 180 238 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam11g1563 364 SUPERFAMILY DNA-binding domain 180 237 IPR016177 GO:0003677(InterPro)
Cam11g1563 364 MobiDBLite consensus disorder prediction 274 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1937 Cam-Chr1:32779559 Cam11g1563 Cam-Chr11:28432388 5.20E-61 dispersed
Cam02g0121 Cam-Chr2:2388781 Cam11g1563 Cam-Chr11:28432388 8.80E-28 dispersed
Cam02g1805 Cam-Chr2:31161551 Cam11g1563 Cam-Chr11:28432388 1.90E-27 dispersed
Cam08g1550 Cam-Chr8:21734546 Cam11g1563 Cam-Chr11:28432388 1.50E-90 dispersed
Cam11g0245 Cam-Chr11:3969586 Cam11g1563 Cam-Chr11:28432388 1.10E-17 dispersed
Cam11g0625 Cam-Chr11:7791580 Cam11g1563 Cam-Chr11:28432388 5.30E-20 dispersed
Cam11g1563 Cam-Chr11:28432388 Cam02g1962 Cam-Chr2:32736271 2.20E-17 dispersed
Cam06g0808 Cam-Chr6:11141398 Cam11g1563 Cam-Chr11:28432388 3.70E-29 transposed
Cam11g1563 Cam-Chr11:28432388 Cam08g0970 Cam-Chr8:15471322 5.80E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52930 PF00847 AP2 2.80E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1563 K09286 - csv:101214560 610.912