Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1563 | ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGGTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAACTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGCGGGAACAACAGCTGTGAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGAAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA | 1095 | 47.49 | MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSWYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAAGTTAVKVENSSSRAVTESDGSEASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28432388 | 28433482 | + | CaPI482276_11g015630.1 | Cam11g1563 | 140485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1563 | 364 | CDD | AP2 | 179 | 239 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1563 | 364 | ProSiteProfiles | AP2/ERF domain profile. | 180 | 237 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1563 | 364 | MobiDBLite | consensus disorder prediction | 287 | 333 | - | - | |
Cam11g1563 | 364 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 16 | 362 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cam11g1563 | 364 | FunFam | Ethylene-responsive transcription factor 2 | 179 | 238 | - | - | |
Cam11g1563 | 364 | SMART | rav1_2 | 180 | 243 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1563 | 364 | PRINTS | Ethylene responsive element binding protein signature | 203 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1563 | 364 | PRINTS | Ethylene responsive element binding protein signature | 181 | 192 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1563 | 364 | Pfam | AP2 domain | 180 | 229 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1563 | 364 | Gene3D | AP2/ERF domain | 180 | 238 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam11g1563 | 364 | SUPERFAMILY | DNA-binding domain | 180 | 237 | IPR016177 | GO:0003677(InterPro) | |
Cam11g1563 | 364 | MobiDBLite | consensus disorder prediction | 274 | 333 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1937 | Cam-Chr1:32779559 | Cam11g1563 | Cam-Chr11:28432388 | 5.20E-61 | dispersed | |
Cam02g0121 | Cam-Chr2:2388781 | Cam11g1563 | Cam-Chr11:28432388 | 8.80E-28 | dispersed | |
Cam02g1805 | Cam-Chr2:31161551 | Cam11g1563 | Cam-Chr11:28432388 | 1.90E-27 | dispersed | |
Cam08g1550 | Cam-Chr8:21734546 | Cam11g1563 | Cam-Chr11:28432388 | 1.50E-90 | dispersed | |
Cam11g0245 | Cam-Chr11:3969586 | Cam11g1563 | Cam-Chr11:28432388 | 1.10E-17 | dispersed | |
Cam11g0625 | Cam-Chr11:7791580 | Cam11g1563 | Cam-Chr11:28432388 | 5.30E-20 | dispersed | |
Cam11g1563 | Cam-Chr11:28432388 | Cam02g1962 | Cam-Chr2:32736271 | 2.20E-17 | dispersed | |
Cam06g0808 | Cam-Chr6:11141398 | Cam11g1563 | Cam-Chr11:28432388 | 3.70E-29 | transposed | |
Cam11g1563 | Cam-Chr11:28432388 | Cam08g0970 | Cam-Chr8:15471322 | 5.80E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52930 | PF00847 | AP2 | 2.80E-15 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1563 | K09286 | - | csv:101214560 | 610.912 |