Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1573 ATGGGCTTCTTCTTCCCTACATCTTTCCTTCTGTTCATCTTCCTCTTTTCCCAACAAATCCTTCATATAAGTGGGTTCGGCGCGGTTGGAGTGAACTACGGGCTGAACGGTGACGATCTTCCGAAACCGGATGATGTCGTAAGCCTATATAAACGATGTGGAATAAATATTGTGCGAATATTTGAGCCGAACCATGGAGTTCTTGATGCTTTGAAAGGCAAGGAAAACTTAGCCTTGTGGCTAGGAACGAGAAATGAAGACATAGAGGGGTTTGCTACAAACCAAGTAGCGGCCAATGCTTGGGTTAATGATAATGTGGTTCCTTATTATAAGGATGTCAACATTGCTTATATCACCATAGGGAATGAGGTTGTCCCTAACGATGTAGCTGCACCATTTGTCGCCAATGCCATTAAAAATATCATGCAAGGGCTTGTTAATGCCGGCATCAAAAGTGACATCAAGGTGACGACAGTGGTAGCGATGTCAGCATTGGAAGTTTCGTACCCACCTTCAGCCGGAGTATTCACAGCCGCTGCTGCCGGAGTAGTGAAAGACATCGCGACCGTGTTGGGATCTTCAGGTGCACCAATATTGGTGAACGTGTACCCATATTTCGCATACGCATCGAACCCACAACAAATCTCACTCAATTACGCGCTCTTCACATCCACCGCCCCCGTGGTAGTGGACGGAGATTTACAGTACTTTAATCTGTTCGACGCCATGGTGGATTCATTTTACGCGGCGCTGGAGAAGATTGACGCCGGGGAAGTGAAAATTGAGATTTCGGAGACTGGGTGGCCGAGCAAAGGAAACGAGCCATTCACGAGCCTTGACAATGCATTGACTTATAACAAAAACCTTGTGAAACATGTGACCAGCGGAGTTGGAACCCCTAAAAAGCCTAATCTCCCATACGATGCGGTTTTGTTTGAAATGTTCAATGAGGATCTTAAGGCGGCTGGGGCTGAGCAAAATTTTGGTATCAATCTCTTCAATTCGCTTCTTCCAATTCTCTCTTCGTTCTCGTCGTCTCTCGCATGGCGGACCAATAAGCATAAACTCAATTCACATTCCCTATCCGACGATAATTCGAATCCCCATTTCCCCCAACTTCTCCTCCGATTTCTTCTTCTATCTGCTCTCTTCTCCTACTCCCAACCTTATTGCATTCTTCTCAGACGCATTGCTTTGATACAGCCTACCCTTCAGCAGTTACCCCAACTCCTTTTGTTTTCCCTTCCTTCCAATTTCAATCGCTACTCTGAAGGTCCTGGAATCAAAGTTTATGTTACGCACCATGCTCTAGGAAGTGAACCTACATTAGTTCCAGAGTGGTTGAGAAGTTCTGGAAGTCTTTCTGGGAGTGGAATTTCAGCTCAACAATTTGCATCGTCTTCTTCACACTCAGATATTTCTTCTCAAGCTCATTACTCGAGGAGTAGAACTTCAAAGAGCATTAGCGATATAGATAAACCACATTTTGATTTCTTGGATTGGTCATCTTCATCAACCTCGAGGAGGAGTTCTAGTAATGGCTCTGGAAAGAATGCTTACAGTAGTTTTAATAGGAATCATCGTGATAGAGACCGTGAGAAGGAGAAAGAAATGTCAAATCTTGGGGACCCCTGGGGTTATGACCTTTCTAGCCCTCTGGTAAACATATTTTCCAGTAGAGTTGAGAAGGAACCTTTGCGGCGTTCTCATTCAATGGTATCTAGGAAGCAAGGTGATTTATTTCCTCAAAGAGTTGCTGCTGACTTGAAAAGTGGAGGATATAATCATAAGGCTAACAGTAATGGCTTTCATTCAGGAAGTACCATTAACGGTATCACTGATAAGGCTGTTTTTGACAAGGATTTTCCATCACTTGGATCAGAAGAAAGGCAAGGAGGACCAGATGTAGGGAGAGTATCATCTCCTGGCTTGACCACATCTGTTCAGAGCTTGCCTATTGGGAGTTCAACTTTGATTGGTCGGGAGGGATGGACATCAGCTTTGGCTGAGGTGCCAACTATTGTCACAGGCAGTTCTGCTACTCCATCATCTGTTCAACAGACTGTTGCTGCCAATTCTGGGTTGGGGTCCCCAAATGCAACAACTCCACGCAAGATGGCTGAAGCTTTAACACAGGCACCAACAAGAGCCCGTGTTACTTCTCAGTCAACTGAGTTATCTGTCAAGACACAGAGGCTTGAGGAATTGGCTATTAAGCAGTCCAGGCAATTAATCCCAGTAACACCTTCAATGCCTAAAGTTTCTGTTCTTAGTTCTTTTGAAAAATCCAAGTCCAAAGGAGCATCCAGAACTGCTGAAATGACTGTGCCTGGCAAGAGCGGTCAACAACAGCTCTCTCTGGTGCAGCATAATAGTCAGCCTCTTCGAGGTGGACAAGTCAAGTCCGATTCTCCAAAAACCACTCATGGGAAATTTCTGGTTCTCAAACCAGTATGGGAGAATGGTGTGTTAAAGGATGGCTCAAATCCTATTAGTAATGTTAACAGTAGAACTGCAAATTGCCAGCCCTCTTCTGTTGCCTCTTCAGCAACACCTAACACTTCAAGGAACCAAAACAACCTGAATCCTTCATCCTCTCTGGAGCGAAAGGTAGCTGCTTTAGTTCTGAAATCAGGATCCACTTTGGAAAAGAGACCTCCTTCTGTTCAATCGCAAAGCAGGAATGATTTCTTCAATCTCATAAAGAAGAAAACTTTGGTGAATGGTTCCACTTGTCTACAAGATTCAGGTATCTGCACATCTCCCATCAAGGAAAAATCTGGGACAGTGAATGGGGAAGTAGTTAGTGCTGCAGTACATCCTTCTACTGTTACAGACAATGAGGTAGCTAGCAATGGTGATACCACTGAAGAGGTTCAGAGGTTTTCTGAGGTTGTGAATAAGAGTTTGAGCCCTAACAAAGCATTATGTACAGACGAGGAAGAGGCTGCATTTCTTCGTTCTCTTGGATGGGAAGAAAATTCAGGAGAGGATGAAGGACTAACAGAGGAGGAGATCAATGCTTTTTATCAGCAGTACATGAACCTGAAGCCATCTTTGAAGCCGATCAGATGTAAGTTACCAGAACCTTCCAGTGCGGGAAGGGGTCGGATAGATGATGTACTTTTGTTTGCAATTGCAGCTGAAGATGGCACGCTAACAGTAGAGCGAAGACAGTTCGCCGCCCAGCCACACCGATCAGGGACCGGCGCCATTGCACGCCGCCGCTCACCTCCTTCCCCCACCGGTAAGCCTCTTTCTTCTCGCGGCCGGCCGGTCTATGCCGAATTAGGCGTTCGAGTGGAGTTTTGGAGAATTGTAAGGGATACTGTCCAGCAGCGAGGTTAG 3348 45.4 MGFFFPTSFLLFIFLFSQQILHISGFGAVGVNYGLNGDDLPKPDDVVSLYKRCGINIVRIFEPNHGVLDALKGKENLALWLGTRNEDIEGFATNQVAANAWVNDNVVPYYKDVNIAYITIGNEVVPNDVAAPFVANAIKNIMQGLVNAGIKSDIKVTTVVAMSALEVSYPPSAGVFTAAAAGVVKDIATVLGSSGAPILVNVYPYFAYASNPQQISLNYALFTSTAPVVVDGDLQYFNLFDAMVDSFYAALEKIDAGEVKIEISETGWPSKGNEPFTSLDNALTYNKNLVKHVTSGVGTPKKPNLPYDAVLFEMFNEDLKAAGAEQNFGINLFNSLLPILSSFSSSLAWRTNKHKLNSHSLSDDNSNPHFPQLLLRFLLLSALFSYSQPYCILLRRIALIQPTLQQLPQLLLFSLPSNFNRYSEGPGIKVYVTHHALGSEPTLVPEWLRSSGSLSGSGISAQQFASSSSHSDISSQAHYSRSRTSKSISDIDKPHFDFLDWSSSSTSRRSSSNGSGKNAYSSFNRNHRDRDREKEKEMSNLGDPWGYDLSSPLVNIFSSRVEKEPLRRSHSMVSRKQGDLFPQRVAADLKSGGYNHKANSNGFHSGSTINGITDKAVFDKDFPSLGSEERQGGPDVGRVSSPGLTTSVQSLPIGSSTLIGREGWTSALAEVPTIVTGSSATPSSVQQTVAANSGLGSPNATTPRKMAEALTQAPTRARVTSQSTELSVKTQRLEELAIKQSRQLIPVTPSMPKVSVLSSFEKSKSKGASRTAEMTVPGKSGQQQLSLVQHNSQPLRGGQVKSDSPKTTHGKFLVLKPVWENGVLKDGSNPISNVNSRTANCQPSSVASSATPNTSRNQNNLNPSSSLERKVAALVLKSGSTLEKRPPSVQSQSRNDFFNLIKKKTLVNGSTCLQDSGICTSPIKEKSGTVNGEVVSAAVHPSTVTDNEVASNGDTTEEVQRFSEVVNKSLSPNKALCTDEEEAAFLRSLGWEENSGEDEGLTEEEINAFYQQYMNLKPSLKPIRCKLPEPSSAGRGRIDDVLLFAIAAEDGTLTVERRQFAAQPHRSGTGAIARRRSPPSPTGKPLSSRGRPVYAELGVRVEFWRIVRDTVQQRG 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28476148 28493325 + CaPI482276_11g015730.1 Cam11g1573 140495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1573 1115 MobiDBLite consensus disorder prediction 502 522 - -
Cam11g1573 1115 MobiDBLite consensus disorder prediction 622 647 - -
Cam11g1573 1115 MobiDBLite consensus disorder prediction 502 544 - -
Cam11g1573 1115 SUPERFAMILY (Trans)glycosidases 29 330 IPR017853 -
Cam11g1573 1115 FunFam glucan endo-1,3-beta-glucosidase, basic 29 336 - -
Cam11g1573 1115 MobiDBLite consensus disorder prediction 759 784 - -
Cam11g1573 1115 Gene3D Glycosidases 28 335 - -
Cam11g1573 1115 MobiDBLite consensus disorder prediction 523 541 - -
Cam11g1573 1115 MobiDBLite consensus disorder prediction 827 867 - -
Cam11g1573 1115 Pfam Glycosyl hydrolases family 17 29 330 IPR000490 GO:0004553(InterPro)|GO:0005975(InterPro)
Cam11g1573 1115 MobiDBLite consensus disorder prediction 1060 1091 - -
Cam11g1573 1115 PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 439 1023 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1534 Cam-Chr3:30294050 Cam11g1573 Cam-Chr11:28476148 7.80E-59 dispersed
Cam11g1571 Cam-Chr11:28470786 Cam11g1573 Cam-Chr11:28476148 2.80E-44 proximal
Cam11g1572 Cam-Chr11:28471747 Cam11g1573 Cam-Chr11:28476148 6.30E-42 tandem
Cam01g0907 Cam-Chr1:10780431 Cam11g1573 Cam-Chr11:28476148 8.00E-27 transposed
Cam03g1321 Cam-Chr3:27066605 Cam11g1573 Cam-Chr11:28476148 2.50E-61 transposed
Cam11g1573 Cam-Chr11:28476148 Cam03g0927 Cam-Chr3:12190776 7.30E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g330 . . . . Bpe02g00082 . . Bma01g02637 Cmo04g02433 Cmo15g00734 Cma01g01407 Cma09g00662 . . . Cpe06g00518 . . . . . . . . . . . . . . . . . . . Lsi04g02363 Csa04g01832 . . Blo17g00198 Blo18g00201 Bda11g00747 Bda13g01502 Bpe02g01618 Bpe14g00363 Bma01g00845 Bma02g00242 . Cmo01g01457 Cmo09g00647 . . Car04g02246 Car15g00660 Cpe01g02020 Cpe02g00535 Bhi09g02636 . . . . . . Cla11g01513 Cam11g1573 Cec11g1602 Cco11g1600 Clacu11g1728 Cmu11g1547 Cre11g1963 . . Chy07g00685 Cme07g00893