Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1589 ATGATATCTGCAGCTGCTGCGGTAATAGGGCGACCTTCTTCTTCACCATTATCACTACTCCTAAAACCTCAAACACCTCGCCGGATTTTGGCTCCTTCGGCTTCATTCTCCTCATCTCTTCCGTCTCGCAAACTCATTCTCTACTCCAAACCCGGCTGCTGTTTGTGCGACGGCCTCAAAGAGAAACTACACGCCGCCTTTCTGCTCGCCGGCCCAGATTCTCTCCACGACGTCGATTTACAGGTGAGGGATATCACCACTAACCCAGAATGGGAGAGAGCTTACCAGTACGAGATTCCCGTGCTCGCGAAAGTGCGCTCTGATGGCTCCGAGGAAGCGCTTCCTCGGCTATCTCCTCTAGGAGAAAGGGTTTGCAAAAAAGGGAGAAGGGGAAAAAGTGCAGAAAAGCAAAGATTTGACTTGGTCAAAAGTTGCAAACATGAGCAAACACAATACTCATTTGAAAGTTTAGTAGGTTTCTTATCTCCACATGATTGCCAGAGTTCCAAACTTCTCAAAAAAGAAAAGGCTTTAGCTATTTAA 543 47.33 MISAAAAVIGRPSSSPLSLLLKPQTPRRILAPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLAGPDSLHDVDLQVRDITTNPEWERAYQYEIPVLAKVRSDGSEEALPRLSPLGERVCKKGRRGKSAEKQRFDLVKSCKHEQTQYSFESLVGFLSPHDCQSSKLLKKEKALAI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28631314 28636992 + CaPI482276_11g015890.1 Cam11g1589 140511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1589 180 PANTHER GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG 34 118 IPR052565 -
Cam11g1589 180 Gene3D Glutaredoxin 38 142 - -
Cam11g1589 180 Pfam Glutaredoxin-like domain (DUF836) 44 110 IPR008554 -
Cam11g1589 180 SUPERFAMILY Thioredoxin-like 39 109 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1589 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g287 . . . Bda03g00532 . Bpe04g00486 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1394 . . . Lsi04g02383 Csa04g01809 . . . . . . . . . . Sed12g1462 . . . . . . . . Bhi09g02664 Tan01g4020 Cmetu07g1621 . . . . Cla11g01529 Cam11g1589 Cec11g1618 Cco11g1619 Clacu11g1747 Cmu11g1564 Cre11g1980 . . Chy07g00655 Cme07g00860