Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1596 ATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACACCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA 498 48.19 MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28691249 28693232 - CaPI482276_11g015960.1 Cam11g1596 140518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1596 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cam11g1596 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cam11g1596 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cam11g1596 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Cam11g1596 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cam11g1596 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cam11g1596 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam11g1596 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam11g1596 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam11g1596 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam11g1596 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cam11g1596 165 Gene3D - 11 162 IPR035921 -
Cam11g1596 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 159 - GO:0016021(PANTHER)
Cam11g1596 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1921 Cam-Chr8:25163476 Cam11g1596 Cam-Chr11:28691249 3.00E-75 dispersed
Cam08g1922 Cam-Chr8:25167292 Cam11g1596 Cam-Chr11:28691249 3.00E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1596 K02155 - ath:AT1G19910 287.345