Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1604 ATGGCGGAGATAGCGGTGTTCGACGGAGAAGCGGCGGAGAGAGTGGTGGCGGAGCTGAGGGAGAGCTATAATTCCGGCAAAACGCGAAGCTACGAATGGAGAGTGAATCAATTGAAGAATCTGTTGAAATTGGTTTGTGAAAACGAAGAAGAGATGGTTCAAACCGTTCATTCCGATCTTTATAAACCCGAATTTGAAGCCTTCGCTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGGAGCAATTGTTCCAGAACCTTTCGGTGTCGTCCTTATCATTTCTGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAAAACTTTTGGAGAAATATTTGGATACATCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCCGAAACTAATGCTTTGTTGGAGCAGAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGGATAGTGATGGCAGCTGCTGCCAAGCATCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCTCCTGACTATATCATAACACCGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTTAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAAACACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAGTTTCTGGCAAGATCGTGCATGGAGGTGAAAAGGACAAAACAAAGCTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCACTAATTATGACGGAGGAGATATTTGGTCCCCTACTTCCCATTCTCACGGTCGACAAGGTGGAGGACAGCTTCGAAATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACTAACAACAAGAAGCTCAAGGAACGATTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGAAACCGCCTTACATCTGACGATTAGCACGTTACCGTTCGGAGGAGTTGGAGAGAGTGGAATGGGAGCTTACCATGGAAAGTTCTCCTTTGATGCATTTAGCCATAAGAAGGCCGTTCTTTATCGAAGTTTCGCAGGCGATGCGCCGATGAGATATCCGCCATACACAAAGGGAAAGCTCAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTTTACTTGGCGCGTGGAGCACACGCGCTTTGTTTGTGGCATGGCAAATCGAGAAATGGAGAATGACAGATGAGGTGACACCGATGACCGATTTAAGAAAATATGAAGCAAATGAAAATACGAGACCTCCATCTTTACGATTCGCCAGCTCCCTGAAATCTCTCCGATTACTCCCTCTCCCAAGGAACACTCCAATCCGTTACTACAACTTCTCCCTCTTTCTCTGTATATACTGA 1671 44.4 MAEIAVFDGEAAERVVAELRESYNSGKTRSYEWRVNQLKNLLKLVCENEEEMVQTVHSDLYKPEFEAFAHEIALLKGSCKLALKELRRWMAPEKVKTSITTFPSSGAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAKLLEKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASRRIIAGKWGCNNGQACIAPDYIITPKEFAPKLVESLKQELERFYGKNPLETKDLSRIVNAKHFDRLTRLLDDDKVSGKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPILTVDKVEDSFEIVNSGTKPLAAYLFTNNKKLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGAWSTRALFVAWQIEKWRMTDEVTPMTDLRKYEANENTRPPSLRFASSLKSLRLLPLPRNTPIRYYNFSLFLCIY 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28799166 28809762 + CaPI482276_11g016040.1 Cam11g1604 140526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1604 556 FunFam Aldehyde dehydrogenase 20 224 - -
Cam11g1604 556 FunFam Aldehyde dehydrogenase 221 421 - -
Cam11g1604 556 PIRSF ALDH 2 475 IPR012394 GO:0006081(InterPro)
Cam11g1604 556 CDD ALDH_F3FHI 12 443 - -
Cam11g1604 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
Cam11g1604 556 Pfam Aldehyde dehydrogenase family 2 441 IPR015590 GO:0016491(InterPro)
Cam11g1604 556 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
Cam11g1604 556 SUPERFAMILY ALDH-like 13 456 IPR016161 GO:0016491(InterPro)
Cam11g1604 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 20 439 IPR016162 GO:0016491(InterPro)
Cam11g1604 556 PANTHER ALDEHYDE DEHYDROGENASE 11 481 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1604 K00128 - - csv:101219329 868.226
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0921 Cam-Chr7:22737793 Cam11g1604 Cam-Chr11:28799166 1.40E-135 dispersed
Cam11g1604 Cam-Chr11:28799166 Cam11g1605 Cam-Chr11:28809788 4.60E-221 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1135 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 3.9e-211 731.1
Cam02g1724 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cam06g1838 . 69 553 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cam06g1838 . 1 553 Aldehyde Dehydrogenase Gene Family AT3G48000 75.8 2.7e-250 861.3
Cam02g1724 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cam06g1135 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 8.9e-161 563.9
Cam02g1724 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cam06g1838 . 48 397 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cam06g1135 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cam11g1604 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.6e-181 632.9
Cam11g1605 . 7 574 Aldehyde Dehydrogenase Gene Family AT4G34240 53.2 2.7e-165 578.9
Cam11g1604 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 6.3e-178 620.5
Cam11g1605 . 157 572 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 7.0e-177 617.1
Cam02g2404 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Cam07g0921 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 6.9e-116 414.5
Cam07g0921 . 27 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.6 2.3e-184 642.1
Cam02g2404 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cam02g1941 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 1.4e-214 742.7
Cam09g1553 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cam01g1872 . 197 631 Aldehyde Dehydrogenase Gene Family AT2G14170 67.8 1.1e-180 630.2
Cam06g1817 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 6.6e-251 863.2
Cam06g1817 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 2.2e-254 874.8
Cam02g1764 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Cam01g1495 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.2 2.1e-261 898.3
Cam06g0457 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.4e-276 948.7