Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1618 ATGAATGAATGTGTTGCATTATCTCAACCATCGTTCATTTCTCCGATTGACAGTCGACCGAAGCAAGTGAAAGATGTGGCGTACCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTGGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACACACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATTTGATTAGTGTATCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAGCTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTTGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCGTAA 1020 43.73 MNECVALSQPSFISPIDSRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGSFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28950159 28956833 + CaPI482276_11g016180.1 Cam11g1618 140540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1618 339 SMART AAA_5 44 177 IPR003593 GO:0016887(InterPro)
Cam11g1618 339 Pfam ATPase family associated with various cellular activities (AAA) 48 176 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam11g1618 339 Pfam RCF1/5-like, AAA+ ATPase lid domain 188 225 - -
Cam11g1618 339 FunFam Replication factor C subunit 4 243 332 - -
Cam11g1618 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 224 IPR027417 -
Cam11g1618 339 Pfam Replication factor C C-terminal domain 244 328 IPR013748 -
Cam11g1618 339 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 19 335 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cam11g1618 339 FunFam Replication factor C subunit 5 12 177 - -
Cam11g1618 339 CDD AAA 29 169 - -
Cam11g1618 339 Gene3D - 16 176 IPR027417 -
Cam11g1618 339 FunFam Replication factor C subunit 4 179 242 - -
Cam11g1618 339 Gene3D - 179 242 - -
Cam11g1618 339 CDD HLD_clamp_RFC 177 236 IPR047854 -
Cam11g1618 339 Gene3D - 243 333 - -
Cam11g1618 339 SUPERFAMILY post-AAA+ oligomerization domain-like 243 332 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1618 K10755 - - csv:101221224 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0345 Cam-Chr10:5583651 Cam11g1618 Cam-Chr11:28950159 1.20E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0007 . 105 657 Core DNA Replication Machinery Family AT4G14700 66.7 1.4e-213 740.0
Cam08g0007 . 105 667 Core DNA Replication Machinery Family AT4G12620 66.7 1.2e-220 763.5
Cam08g2047 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.4 6.0e-142 500.7
Cam07g0479 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 6.6e-151 530.8
Cam06g0369 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cam11g0931 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 8.0e-92 334.0
Cam09g2299 . 68 864 Core DNA Replication Machinery Family AT1G79150 59.6 6.7e-248 854.0
Cam10g1373 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1353.6
Cam01g2506 . 62 636 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cam02g0506 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cam11g0371 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.3 0.0e+00 1113.2
Cam01g2656 . 7 800 Core DNA Replication Machinery Family AT5G44635 73.4 0.0e+00 1163.3
Cam09g0512 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cam02g2032 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.1 1.5e-157 553.1
Cam02g2032 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.6 4.3e-143 505.0
Cam09g0867 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cam10g2023 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1081.2
Cam09g1617 . 1 424 Core DNA Replication Machinery Family AT2G14050 80.8 9.9e-199 690.3
Cam02g1242 . 1929 2339 Core DNA Replication Machinery Family AT2G20980 56.4 1.4e-118 423.3
Cam11g1620 . 7 960 Core DNA Replication Machinery Family AT1G77320 50.3 9.5e-257 883.6
Cam09g0265 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT1G19080 69.0 2.7e-64 241.9
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT3G55490 69.0 2.7e-64 241.9
Cam05g0170 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 1.7e-50 196.1
Cam02g1288 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1752.3
Cam04g1197 . 166 783 Core DNA Replication Machinery Family AT1G67630 59.6 2.3e-205 712.2
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam08g0150 . 136 579 Core DNA Replication Machinery Family AT5G41880 65.0 9.7e-177 616.7
Cam01g1553 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cam10g1715 . 1 419 Core DNA Replication Machinery Family AT2G42120 76.1 6.3e-197 683.7
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam01g0555 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 7.1e-37 150.2
Cam02g2276 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2982.6
Cam09g2092 . 68 2104 Core DNA Replication Machinery Family AT1G08260 68.0 0.0e+00 2787.7
Cam02g2276 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2948.3
Cam09g2092 . 90 2215 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2758.8
Cam04g1308 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.9 7.5e-122 434.5
Cam04g1307 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.6 4.5e-58 222.6
Cam02g2330 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.2 1.6e-306 1048.9
Cam10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cam04g0473 . 88 441 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cam11g1618 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cam08g1021 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.8 1.5e-154 542.7
Cam11g0164 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.6 9.7e-252 866.3
Cam10g0103 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Cam06g1696 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 5.7e-249 857.1
Cam10g0103 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 2.3e-227 785.8
Cam06g1696 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 2.7e-241 831.6
Cam10g0103 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.3 3.7e-224 775.0
Cam03g1804 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Cam05g0314 . 30 608 Core DNA Replication Machinery Family AT1G08840 62.1 3.7e-203 705.7
Cam07g1587 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 5.0e-115 411.0
Cam02g2230 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 1.1e-297 1019.2
Cam02g2230 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.5e-242 835.1