Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1620 ATGCTGAAGCCGAAACCTTTCACCGGAGCTAATGTGTTCGTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGCCCTAACGATTATCATGTTATCTCCTCGGCCGATCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGATGCAAGTTGCTAGGTCCTCAGTGTGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATACGAAAGCCTCTCTAGATGTCAGCTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCCTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGGCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTACTCTTTCACAGAGCACACCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAACGAAGAAAACACCAATAATTGTATTGCAAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAACTCCATCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGCATGCAGTAAAACGAGCACCATCGTCATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAATGACAGAGGAAACATTTCATGAAAAAAGTGAAACAAACGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTCTAGCAAATGGTACAAACAAGAGTCAAGAAAATATGCAGCGTGATTTCGTGGTTCCAAATGGGAAGTCATCATGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGACAAAGTATGAGGCTGCCTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCCATTCTGCTATCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCCGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGACAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGGGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCAGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 2883 42.28 MLKPKPFTGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCKLLGPQCVMSCAKEHRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVPPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRGCLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEATLSQSTPMFSDASHFINEVDVEVPVGMGKNEENTNNCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGTPSEMEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKACSKTSTIVMDRNKVPNVHPIMPSNVLEGNIHVRIGKTSMTEETFHEKSETNVSGDRTMKLSQKSQQCLANGTNKSQENMQRDFVVPNGKSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRMKQKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPIHSAIPRDQSAGTNSSTIGEVEQISFTKKKRKFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRADRKEDISNPTTGDGGVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28968210 28984994 - CaPI482276_11g016200.1 Cam11g1620 140542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1620 960 SUPERFAMILY BRCT domain 557 642 IPR036420 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 653 736 IPR001357 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 363 455 IPR001357 -
Cam11g1620 960 Gene3D BRCT domain 97 185 IPR036420 -
Cam11g1620 960 SMART BRCT_7 97 174 IPR001357 -
Cam11g1620 960 SMART BRCT_7 555 630 IPR001357 -
Cam11g1620 960 SMART BRCT_7 365 445 IPR001357 -
Cam11g1620 960 SMART BRCT_7 4 86 IPR001357 -
Cam11g1620 960 SMART BRCT_7 184 251 IPR001357 -
Cam11g1620 960 SMART BRCT_7 650 726 IPR001357 -
Cam11g1620 960 FunFam Transcription coactivator 36 94 - -
Cam11g1620 960 Gene3D BRCT domain 549 646 IPR036420 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 182 261 IPR001357 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 553 640 IPR001357 -
Cam11g1620 960 FunFam Transcription coactivator 345 455 - -
Cam11g1620 960 FunFam Transcription coactivator 551 646 - -
Cam11g1620 960 Pfam twin BRCT domain 191 243 IPR001357 -
Cam11g1620 960 Pfam twin BRCT domain 657 718 IPR001357 -
Cam11g1620 960 Pfam twin BRCT domain 103 166 IPR001357 -
Cam11g1620 960 CDD BRCT 103 170 - -
Cam11g1620 960 SUPERFAMILY BRCT domain 618 737 IPR036420 -
Cam11g1620 960 SUPERFAMILY BRCT domain 57 185 IPR036420 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Cam11g1620 960 Pfam BRCA1 C Terminus (BRCT) domain 368 441 IPR001357 -
Cam11g1620 960 CDD BRCT_TopBP1_rpt3 362 446 - -
Cam11g1620 960 SUPERFAMILY BRCT domain 185 262 IPR036420 -
Cam11g1620 960 Gene3D BRCT domain 344 452 IPR036420 -
Cam11g1620 960 CDD BRCT_TopBP1_rpt2_like 185 251 - -
Cam11g1620 960 Gene3D BRCT domain 24 94 IPR036420 -
Cam11g1620 960 FunFam Transcription coactivator 97 185 - -
Cam11g1620 960 Gene3D BRCT domain 186 261 IPR036420 -
Cam11g1620 960 MobiDBLite consensus disorder prediction 883 929 - -
Cam11g1620 960 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 958 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Cam11g1620 960 Gene3D BRCT domain 650 743 IPR036420 -
Cam11g1620 960 SUPERFAMILY BRCT domain 365 449 IPR036420 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1620 K10728 - csv:101212525 1691.4