Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1620 ATGCTGAAGCCGAAACCTTTCACCGGAGCTAATGTGTTCGTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGCCCTAACGATTATCATGTTATCTCCTCGGCCGATCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGATGCAAGTTGCTAGGTCCTCAGTGTGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATACGAAAGCCTCTCTAGATGTCAGCTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCCTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGGCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTACTCTTTCACAGAGCACACCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAACGAAGAAAACACCAATAATTGTATTGCAAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAACTCCATCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGCATGCAGTAAAACGAGCACCATCGTCATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAATGACAGAGGAAACATTTCATGAAAAAAGTGAAACAAACGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTCTAGCAAATGGTACAAACAAGAGTCAAGAAAATATGCAGCGTGATTTCGTGGTTCCAAATGGGAAGTCATCATGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGACAAAGTATGAGGCTGCCTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCCATTCTGCTATCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCCGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGACAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGGGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCAGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 2883 42.28 MLKPKPFTGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCKLLGPQCVMSCAKEHRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVPPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRGCLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEATLSQSTPMFSDASHFINEVDVEVPVGMGKNEENTNNCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGTPSEMEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKACSKTSTIVMDRNKVPNVHPIMPSNVLEGNIHVRIGKTSMTEETFHEKSETNVSGDRTMKLSQKSQQCLANGTNKSQENMQRDFVVPNGKSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRMKQKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPIHSAIPRDQSAGTNSSTIGEVEQISFTKKKRKFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRADRKEDISNPTTGDGGVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28968210 28984994 - CaPI482276_11g016200.1 Cam11g1620 140542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1620 960 SUPERFAMILY BRCT domain 557 642 IPR036420 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 653 736 IPR001357 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 363 455 IPR001357 -
Cam11g1620 960 Gene3D BRCT domain 97 185 IPR036420 -
Cam11g1620 960 SMART BRCT_7 97 174 IPR001357 -
Cam11g1620 960 SMART BRCT_7 555 630 IPR001357 -
Cam11g1620 960 SMART BRCT_7 365 445 IPR001357 -
Cam11g1620 960 SMART BRCT_7 4 86 IPR001357 -
Cam11g1620 960 SMART BRCT_7 184 251 IPR001357 -
Cam11g1620 960 SMART BRCT_7 650 726 IPR001357 -
Cam11g1620 960 FunFam Transcription coactivator 36 94 - -
Cam11g1620 960 Gene3D BRCT domain 549 646 IPR036420 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 182 261 IPR001357 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 553 640 IPR001357 -
Cam11g1620 960 FunFam Transcription coactivator 345 455 - -
Cam11g1620 960 FunFam Transcription coactivator 551 646 - -
Cam11g1620 960 Pfam twin BRCT domain 191 243 IPR001357 -
Cam11g1620 960 Pfam twin BRCT domain 657 718 IPR001357 -
Cam11g1620 960 Pfam twin BRCT domain 103 166 IPR001357 -
Cam11g1620 960 CDD BRCT 103 170 - -
Cam11g1620 960 SUPERFAMILY BRCT domain 618 737 IPR036420 -
Cam11g1620 960 SUPERFAMILY BRCT domain 57 185 IPR036420 -
Cam11g1620 960 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Cam11g1620 960 Pfam BRCA1 C Terminus (BRCT) domain 368 441 IPR001357 -
Cam11g1620 960 CDD BRCT_TopBP1_rpt3 362 446 - -
Cam11g1620 960 SUPERFAMILY BRCT domain 185 262 IPR036420 -
Cam11g1620 960 Gene3D BRCT domain 344 452 IPR036420 -
Cam11g1620 960 CDD BRCT_TopBP1_rpt2_like 185 251 - -
Cam11g1620 960 Gene3D BRCT domain 24 94 IPR036420 -
Cam11g1620 960 FunFam Transcription coactivator 97 185 - -
Cam11g1620 960 Gene3D BRCT domain 186 261 IPR036420 -
Cam11g1620 960 MobiDBLite consensus disorder prediction 883 929 - -
Cam11g1620 960 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 958 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Cam11g1620 960 Gene3D BRCT domain 650 743 IPR036420 -
Cam11g1620 960 SUPERFAMILY BRCT domain 365 449 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1620 K10728 - - csv:101212525 1691.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0007 . 105 657 Core DNA Replication Machinery Family AT4G14700 66.7 1.4e-213 740.0
Cam08g0007 . 105 667 Core DNA Replication Machinery Family AT4G12620 66.7 1.2e-220 763.5
Cam08g2047 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.4 6.0e-142 500.7
Cam07g0479 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 6.6e-151 530.8
Cam06g0369 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cam11g0931 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 8.0e-92 334.0
Cam09g2299 . 68 864 Core DNA Replication Machinery Family AT1G79150 59.6 6.7e-248 854.0
Cam10g1373 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1353.6
Cam01g2506 . 62 636 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cam02g0506 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cam11g0371 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.3 0.0e+00 1113.2
Cam01g2656 . 7 800 Core DNA Replication Machinery Family AT5G44635 73.4 0.0e+00 1163.3
Cam09g0512 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cam02g2032 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.1 1.5e-157 553.1
Cam02g2032 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.6 4.3e-143 505.0
Cam09g0867 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cam10g2023 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1081.2
Cam09g1617 . 1 424 Core DNA Replication Machinery Family AT2G14050 80.8 9.9e-199 690.3
Cam02g1242 . 1929 2339 Core DNA Replication Machinery Family AT2G20980 56.4 1.4e-118 423.3
Cam11g1620 . 7 960 Core DNA Replication Machinery Family AT1G77320 50.3 9.5e-257 883.6
Cam09g0265 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT1G19080 69.0 2.7e-64 241.9
Cam11g0646 . 664 831 Core DNA Replication Machinery Family AT3G55490 69.0 2.7e-64 241.9
Cam05g0170 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 1.7e-50 196.1
Cam02g1288 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1752.3
Cam04g1197 . 166 783 Core DNA Replication Machinery Family AT1G67630 59.6 2.3e-205 712.2
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam08g0150 . 136 579 Core DNA Replication Machinery Family AT5G41880 65.0 9.7e-177 616.7
Cam01g1553 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cam10g1715 . 1 419 Core DNA Replication Machinery Family AT2G42120 76.1 6.3e-197 683.7
Cam06g0017 . 1 444 Core DNA Replication Machinery Family AT1G67320 64.5 1.4e-181 632.9
Cam01g0555 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 7.1e-37 150.2
Cam02g2276 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2982.6
Cam09g2092 . 68 2104 Core DNA Replication Machinery Family AT1G08260 68.0 0.0e+00 2787.7
Cam02g2276 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2948.3
Cam09g2092 . 90 2215 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2758.8
Cam04g1308 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.9 7.5e-122 434.5
Cam04g1307 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.6 4.5e-58 222.6
Cam02g2330 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.2 1.6e-306 1048.9
Cam10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cam04g0473 . 88 441 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cam11g1618 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cam08g1021 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.8 1.5e-154 542.7
Cam11g0164 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.6 9.7e-252 866.3
Cam10g0103 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Cam06g1696 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 5.7e-249 857.1
Cam10g0103 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 2.3e-227 785.8
Cam06g1696 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 2.7e-241 831.6
Cam10g0103 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.3 3.7e-224 775.0
Cam03g1804 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Cam05g0314 . 30 608 Core DNA Replication Machinery Family AT1G08840 62.1 3.7e-203 705.7
Cam07g1587 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 5.0e-115 411.0
Cam02g2230 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 1.1e-297 1019.2
Cam02g2230 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.5e-242 835.1