Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1624 ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCGCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 639 39.12 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29002783 29007003 + CaPI482276_11g016240.1 Cam11g1624 140546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1624 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam11g1624 212 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 Gene3D - 13 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam11g1624 212 Pfam K-box region 82 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam11g1624 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam11g1624 212 Coils Coil 77 111 - -
Cam11g1624 212 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2036 Cam-Chr5:29040875 Cam11g1624 Cam-Chr11:29002783 6.50E-34 dispersed
Cam05g2615 Cam-Chr5:33724693 Cam11g1624 Cam-Chr11:29002783 5.50E-15 dispersed
Cam08g1504 Cam-Chr8:21264245 Cam11g1624 Cam-Chr11:29002783 2.70E-26 dispersed
Cam10g0941 Cam-Chr10:21328192 Cam11g1624 Cam-Chr11:29002783 5.50E-20 dispersed
Cam11g1624 Cam-Chr11:29002783 Cam10g0794 Cam-Chr10:15318412 6.50E-06 dispersed
Cam11g1624 Cam-Chr11:29002783 Cam07g1621 Cam-Chr7:30810847 2.30E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52934 PF01486 K-box 1.20E-18 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1624 K09264 - csv:101222239 408.297