Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1624 | ATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCGCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA | 639 | 39.12 | MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29002783 | 29007003 | + | CaPI482276_11g016240.1 | Cam11g1624 | 140546 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1624 | 212 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 181 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cam11g1624 | 212 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | Gene3D | - | 13 | 100 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | ProSiteProfiles | K-box domain profile. | 84 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam11g1624 | 212 | Pfam | K-box region | 82 | 163 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam11g1624 | 212 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam11g1624 | 212 | Coils | Coil | 77 | 111 | - | - | |
Cam11g1624 | 212 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g2036 | Cam-Chr5:29040875 | Cam11g1624 | Cam-Chr11:29002783 | 6.50E-34 | dispersed | |
Cam05g2615 | Cam-Chr5:33724693 | Cam11g1624 | Cam-Chr11:29002783 | 5.50E-15 | dispersed | |
Cam08g1504 | Cam-Chr8:21264245 | Cam11g1624 | Cam-Chr11:29002783 | 2.70E-26 | dispersed | |
Cam10g0941 | Cam-Chr10:21328192 | Cam11g1624 | Cam-Chr11:29002783 | 5.50E-20 | dispersed | |
Cam11g1624 | Cam-Chr11:29002783 | Cam10g0794 | Cam-Chr10:15318412 | 6.50E-06 | dispersed | |
Cam11g1624 | Cam-Chr11:29002783 | Cam07g1621 | Cam-Chr7:30810847 | 2.30E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52934 | PF01486 | K-box | 1.20E-18 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1624 | K09264 | - | csv:101222239 | 408.297 |