Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1649 ATGGCGACAACTGACAGGTTTAGAGGTGGGGGAAATTTCGTGTCCGATTCAACGAAGGGGGCGGGGACAGTGGCATATCCACAGGGAACAGTGTCATTTTTCTTGCAGCAGCTCGTTGTTACCAGATTACTATATGTTCAAGAAAGCAATTCCTGTATTTGGTATCTCAGATGGTTTGTTGTAATTGTATTATGCTTGACTGGTGTCACCATGGGCTTCTGTACCGTAAAATGGCAATGGCTACTGATTCTTCACATTGTGCCGCTTTGTATGTTAATGAGCAGAAGCAGGGGTATCAGTTCTGATGGCGAGGCACTCTTGAGCTTCAGAGCATCAATTATTGATTCTGATGGTGTTCTTCTTCAATGGAAGCCAGAGGAACCCCATCCTTGTAAATGGAAAGGAATAACATGTGATCCAAAAACCAAGAGAGTGATATATTTGAGTCTTCCTTATCACAAACTTAGTGGATCGCTATCCCCCGAACTTGGAAAGCTTGACCACCTAAAAATTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTCCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTAGGGAATCTTTCGGCACTTAAAAACTTAGACATTTCAAGTAACTCACTCGGTGGAAATATTCCCATCTCGCTCGGGAAGTTGAGCAAGCTTATTAGTTTAAACGTGTCTGCCAATTTTCTGGTTGGATCAATTCCAAATGTTGGCGTGCTACTCAACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTCATGTGCAAAGATGACAAAAAGGGACCTGAAACTAATGAGTCACCATTCTCAGTGGAAAATCAAATTGGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAAGTCTAGTGCTGGATGGTTGTGGAGGTGCTCGTGCTGCGGGTGTAATGTTTCATGGAGACTTGCCATACGTATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATTGTAAAATTGAATGAGGGCTTTGATCGTTTTTTTGAGAGAGAGCTCGAAATTCTTGGAAGCATTAAGCACAGGTTTCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGACGAGGCACTACACGGCCTCCGTACTGAATTGTCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCCCCGCGGATAATTCACCGAGACATAAAATCAAGCAACATTTTACTTGACGCTAATTTGGAGGCTCGAGTTTCTGACTTTGGACTTGCGAAACTTTTAGAGGATGAAGAATCGCACATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGTCCCACAGATGCTTCATTCATTGAGAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTAGTCACAGAGAATCGACAACGAGAAATAGCTGACTTACAGTGCGAGGGCATGCAAGCAGAGAGCTTGGATGCATTGCTATCGGTTGCCATCCAATGTGTTTCGTCGAATGCAGAGGATCGACCAACCATGCATAGGGTAGTCCAGATATTGGAATCTGAGATTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 2007 42.45 MATTDRFRGGGNFVSDSTKGAGTVAYPQGTVSFFLQQLVVTRLLYVQESNSCIWYLRWFVVIVLCLTGVTMGFCTVKWQWLLILHIVPLCMLMSRSRGISSDGEALLSFRASIIDSDGVLLQWKPEEPHPCKWKGITCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGKLSKLISLNVSANFLVGSIPNVGVLLNFSESSFLGNRGLCGKQINVMCKDDKKGPETNESPFSVENQIGKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKSLVLDGCGGARAAGVMFHGDLPYVSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGLRTELSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIADLQCEGMQAESLDALLSVAIQCVSSNAEDRPTMHRVVQILESEIMTPCPSDFYDTD 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29204279 29213223 - CaPI482276_11g016490.1 Cam11g1649 140571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1649 668 Pfam Leucine rich repeat N-terminal domain 100 139 IPR013210 -
Cam11g1649 668 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cam11g1649 668 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515(InterPro)
Cam11g1649 668 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 354 456 - -
Cam11g1649 668 SUPERFAMILY L domain-like 100 267 - -
Cam11g1649 668 Gene3D Transferase(Phosphotransferase) domain 1 457 659 - -
Cam11g1649 668 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 255 654 IPR050647 -
Cam11g1649 668 SMART serkin_6 381 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1649 668 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 457 663 - -
Cam11g1649 668 Gene3D Phosphorylase Kinase; domain 1 359 456 - -
Cam11g1649 668 ProSitePatterns Protein kinases ATP-binding region signature. 387 413 IPR017441 GO:0005524(InterPro)
Cam11g1649 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1649 668 Pfam Protein kinase domain 383 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1649 668 ProSiteProfiles Protein kinase domain profile. 381 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1649 668 Gene3D Ribonuclease Inhibitor 99 286 IPR032675 -
Cam11g1649 668 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 99 261 - -
Cam11g1649 668 SUPERFAMILY Protein kinase-like (PK-like) 369 652 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1783 Cam-Chr6:28985209 Cam11g1649 Cam-Chr11:29204279 4.90E-124 dispersed
Cam07g1427 Cam-Chr7:28839867 Cam11g1649 Cam-Chr11:29204279 4.30E-227 dispersed
Cam11g1649 Cam-Chr11:29204279 Cam11g1739 Cam-Chr11:29983053 2.10E-82 dispersed
Cam11g1649 Cam-Chr11:29204279 Cam01g1487 Cam-Chr1:28427222 1.10E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85595 PF00069 Pkinase 1.10E-44 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1649 - - - 0.0