Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1651 ATGCTAATTTTAGTTGGAAATATGCAAGGAACAGGAACAATGGCGTCTGTGGCTTCCTTGTTCAATTTGGGAGGTGTTGGAATGGTAGGATCATTAGAGAAGCCTCGTTCACAGTTTCGTGGAGTTTGTTTATCGAGAAGAGGTTTTAATGGAAGTAATAGATGGTATTATGTATCATTTCCTCTTTGTAAATATTCAGCAACAACAACTGATTTTGTTGCCGACCAAGGCAATGCCATCTCTGTTGATTCTAATTCTTATAGAAGAAGTAAAGAAGACGACAACACTGATTTTCTTCTGAAGCCAGCTCCCAAGCCAGTATTGAAAGCTGCAGAGTCTAAGCCCCTTGTAGGTTTGAATAAAGTAACATGGGAATCACCGAGAACTAATGGGGATTCTAACAGTAACAGCAAATTGTTGGATGATGAAGAAGAAAGGAGCAAGGTGATTGAGTCTCTAGGAGAGGTATTGGAAAAGGCCGAAAAGCTAGAGACTCCGAAGTTGGGTAATAAGAGACCAGGAAGAGGTGTAGACAAGCCAACAACATCAAGCTCAAGCTCTACTTCGAAGCCAGTAAACTCGATGGCGAATCGAAAATCTAAAACTTTGAAAAGTGTTTGGCGCAAGGGAGATACAGTTGCATCGGTGCAGAAGATTGTAGCAGAGCCATCTAAGCCTAATGGGGAAGTTGAAGCTAAACCAGGGGGAGCTAGCAAGGTAGAGCCTCAATCACGTGCTGCTTTTAGACCCCCTCAACCACCTGTGAAACCACAACCAAAATTACAAGAAAAGCCTTTGGCTGCACCCCGACCTACATTAAAGAAACCAGTTGTCTTGAAGGATGTGGGGGCAGCAACTGTGACAGCAGATGATGAAACTAATACAGCAGCAAAGACAAAAGAGAGAAAGCCGATTCTGATTGACAAATATGCTTCAAAGAAACCTGTAGTTGATCCTTTTATTTCTGATGCTGTATTGGCCCCAACAAAACCTGGAAAAGCCCCTCCTCCTGGAAAGTTCAAGGAAGATTACCGCAAGAAGAGTGTTGCATCAGGAGGTCCACGAAGGAGAATGGTCAATAACGATAAAGATGATGTTGAAATCCCTGATGATGTTTCCATTCCTAGTGTGACTACAGCACGAAAAGGAAGGAAATGGAGCAAGGCGAGCCGGAAGGCAGCAAGAATCCAGGCTTCCAAAGATGCTGCCCCTGTGAAAGTTGAAATTCTAGAAGTTGAAGAAAGTGGTATGTTGCTTGAGGAATTGGCATACAATTTGGCCATCAGTGAAGGTGAAATTCTTGGGTATCTATATTCAAAGGGGATTAAGCCTGATGGCGTGCAAACTTTAGATAAAGATATAGTGAAGATGATCTGCAAAGAGTATGATGTGGAGACCATAGACGTTGATCCGGTTAAAGTTGAAGAGTTCGCTAAAAAGAGGGATATTTTTGATGAAGAAGATCTGGATAAACTTCAAAGCAGGCCTCCAGTCATCACCATTATGGGACATGTTGACCATGGCAAGACTACACTTTTGGACTACATCCGCAGGAGCAAGGTAGCTGCATCAGAAGCTGGTGGGATTACTCAAGGAATTGGTGCTTATAGGGTGTTGGTACCACTTGATGGCAAGTTGCAGCCATGCGTGTTCCTTGATACTCCGGGGCATGAGGCGTTTGGAGCCATGAGAGCTCGTGGTGCTCGGGTGACAGACATTGCCATCATTGTGGTGGCTGCTGATGATGGAATCCGGCCTCAGACAAATGAGGCTATAGCTCATGCCAGAGCAGCTGGAGTACCAATAGTGATTGCAATAAATAAGATTGACAAAGATGGTGCTAATGCAGATAGAGTGATGCAAGAACTTTCCTCTATCGGTCTAATGCCAGAGGACTGGGGCGGTGACATCCCCATGGTGCAGATTAGTGCTCTGAAAGGGCTGAATGTGGATGACCTGTTGGAAACAGTAATGCTTCTTGCTGAGTTGCAAGAATTGAAGGCTAATCCCGATAGAAGTGCGAAAGGGACCGTCATTGAGGCAGGTCTTGACAAATCAAAAGGACCATTTGCTACGTTTATTGTACAGAATGGAACCCTTAAAAGGGGAGACGTTGTAGTATGTGGGGAGGCCTTTGGGAAGGTTAGAGCTTTATTTGATGATGGCGGGAAACGAGTCGACGAAGCTGGACCTTCTTTACCAGTACAGGTCATTGGGTTAAATATTGTGCCAATTGCCGGTGATGTATTCGAGGTTGTTGATTCCCTTGATACTGCTCGTGAAAAGGCAGAGTTACGTGCCGAGGCCTTGCGGTCACAACGAATATCAGATAAGGCTGGAGATGGGAAGGTTACCCTTTCTTCTTTAGCTTCAGCAGTGTCATCAGGAAAGCAGGCTGGGTTAGACTTGCACCAACTGAACATAATTATGAAGGTCGATGTTCAGGGATCAATTGAGGCTATTAGACAAGCCCTTCAGGTGCTCCCGCGAGAAAATGTCTCTTTGAAGTTTCTTTTGCAAGCAACTGGCGATGTGAGCTCCAGTGATATTGATCTTGCAGTTGCAAGCAAAGCCATAATTTTAGGATTTAATGTTAAAGCACCAGGTTCTGTCAAAAGTTATGCGGAAAATAAAGGTGTCGAAATTAGGCTCTATAGAGTCATCTACGAGCTTATTGATGATGTGCGGAACGCAATGGAAGGACTCCTAGAACCTGTAGAGGAAAAAGTACCAATAGGGTCGGCAGAAGTCCGTGCAGTATTCAGTAGTGGCAGTGGTCTTGTTGCTGGATGCATGGTAGTAGAAGGAAAGCTGGTAAAGGGCTGTGGCATTCAAGTTCTGCGGAAGGGTAAAACGGTGTATAATGGTCAACTTGATTCACTGCGACGAGTCAAAGAAATCGTGAAAGAGGTAAATGCTGGCTTAGAGTGTGGAGTTGGAATGGAGGATTACAATGATTGGGAGGTGGGGGATGTAATAGAGGCCTTTGACACCATTATGAAGAAGCGGACGCTAGAAGAGGCCTCGGCTTCAATGACAGCTGCACTGGAGGAAGCTGGAATTGACTTGTAG 3072 44.69 MLILVGNMQGTGTMASVASLFNLGGVGMVGSLEKPRSQFRGVCLSRRGFNGSNRWYYVSFPLCKYSATTTDFVADQGNAISVDSNSYRRSKEDDNTDFLLKPAPKPVLKAAESKPLVGLNKVTWESPRTNGDSNSNSKLLDDEEERSKVIESLGEVLEKAEKLETPKLGNKRPGRGVDKPTTSSSSSTSKPVNSMANRKSKTLKSVWRKGDTVASVQKIVAEPSKPNGEVEAKPGGASKVEPQSRAAFRPPQPPVKPQPKLQEKPLAAPRPTLKKPVVLKDVGAATVTADDETNTAAKTKERKPILIDKYASKKPVVDPFISDAVLAPTKPGKAPPPGKFKEDYRKKSVASGGPRRRMVNNDKDDVEIPDDVSIPSVTTARKGRKWSKASRKAARIQASKDAAPVKVEILEVEESGMLLEELAYNLAISEGEILGYLYSKGIKPDGVQTLDKDIVKMICKEYDVETIDVDPVKVEEFAKKRDIFDEEDLDKLQSRPPVITIMGHVDHGKTTLLDYIRRSKVAASEAGGITQGIGAYRVLVPLDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHARAAGVPIVIAINKIDKDGANADRVMQELSSIGLMPEDWGGDIPMVQISALKGLNVDDLLETVMLLAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGEAFGKVRALFDDGGKRVDEAGPSLPVQVIGLNIVPIAGDVFEVVDSLDTAREKAELRAEALRSQRISDKAGDGKVTLSSLASAVSSGKQAGLDLHQLNIIMKVDVQGSIEAIRQALQVLPRENVSLKFLLQATGDVSSSDIDLAVASKAIILGFNVKAPGSVKSYAENKGVEIRLYRVIYELIDDVRNAMEGLLEPVEEKVPIGSAEVRAVFSSGSGLVAGCMVVEGKLVKGCGIQVLRKGKTVYNGQLDSLRRVKEIVKEVNAGLECGVGMEDYNDWEVGDVIEAFDTIMKKRTLEEASASMTAALEEAGIDL 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29219702 29226642 + CaPI482276_11g016510.1 Cam11g1651 140573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1651 1023 Gene3D Translation factors 670 785 - -
Cam11g1651 1023 Gene3D Translation factors 908 1004 - -
Cam11g1651 1023 FunFam Translation initiation factor IF-2 802 907 - -
Cam11g1651 1023 FunFam Translation initiation factor IF-2 670 788 - -
Cam11g1651 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 670 IPR027417 -
Cam11g1651 1023 MobiDBLite consensus disorder prediction 336 350 - -
Cam11g1651 1023 Pfam Translation-initiation factor 2 801 895 IPR023115 -
Cam11g1651 1023 Gene3D - 802 907 IPR036925 -
Cam11g1651 1023 Gene3D - 491 669 IPR027417 -
Cam11g1651 1023 MobiDBLite consensus disorder prediction 123 145 - -
Cam11g1651 1023 Hamap Translation initiation factor IF-2 [infB]. 7 1003 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cam11g1651 1023 ProSitePatterns Initiation factor 2 signature. 956 978 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cam11g1651 1023 SUPERFAMILY Translation proteins 670 753 IPR009000 -
Cam11g1651 1023 Pfam Elongation factor Tu GTP binding domain 499 659 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g1651 1023 Pfam Elongation factor G domain 2 674 752 IPR053905 -
Cam11g1651 1023 NCBIfam translation initiation factor IF-2 417 1005 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cam11g1651 1023 CDD IF2_eIF5B 497 663 - -
Cam11g1651 1023 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 494 667 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g1651 1023 MobiDBLite consensus disorder prediction 177 201 - -
Cam11g1651 1023 NCBIfam small GTP-binding protein domain 496 657 IPR005225 GO:0005525(InterPro)
Cam11g1651 1023 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 801 913 IPR036925 -
Cam11g1651 1023 PRINTS GTP-binding elongation factor signature 550 560 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g1651 1023 PRINTS GTP-binding elongation factor signature 498 511 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g1651 1023 PRINTS GTP-binding elongation factor signature 566 577 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g1651 1023 PRINTS GTP-binding elongation factor signature 602 611 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam11g1651 1023 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 256 1007 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(PANTHER)
Cam11g1651 1023 FunFam Translation initiation factor IF-2 491 669 - -
Cam11g1651 1023 Pfam Translation initiation factor IF-2, N-terminal region 419 465 IPR006847 -
Cam11g1651 1023 MobiDBLite consensus disorder prediction 328 367 - -
Cam11g1651 1023 SUPERFAMILY Translation proteins 909 1003 IPR009000 -
Cam11g1651 1023 CDD IF2_mtIF2_II 674 768 IPR044145 -
Cam11g1651 1023 MobiDBLite consensus disorder prediction 161 277 - -
Cam11g1651 1023 CDD mtIF2_IVc 913 995 - -
Cam11g1651 1023 Coils Coil 753 773 - -
Cam11g1651 1023 FunFam Translation initiation factor IF-2 907 1004 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1651 K02519 - - csv:101216442 1833.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1505 Cam-Chr7:29682746 Cam11g1651 Cam-Chr11:29219702 3.40E-109 dispersed
Cam09g0953 Cam-Chr9:9812246 Cam11g1651 Cam-Chr11:29219702 5.80E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542