Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1654 ATGGATTTCGTTTCGAATTCACTGGCTTGCAAGACTCTCCCTTGCCGGACTCTGTTTCCGCCGTGCGCAACATCTTCTCGCCGCCGCCAATGGTTGCCTTCTTCACTCTTCAATGCAGGCAAGCGAGTCAGAGAGCTTCGCTGCGAGTTCGAAGTGAACGTTAATGGCGCTCTTTCCAGCGACTTCGACCCTCGTTCCGTTGACAGGAAAAAAGCATTGGAGGCAGCAATGAATGAAATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGACTTGGAAGTGCTGGTGGAGCATTAGTGGAAACTTTCCCAAGTGGCTGTTTGACTTTAGATTGTGCCTTAGGTGGTGGCCTTCCTAAAGGCAGAATTGTCGAGATATTTGGACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGCAATTGCAGAAGTACAGAAACTAGGAGGAAATGCGATGCTTGTAGATGCAGAGCATGCCTTTGATCCAGCATATTCTAAAGCTGTAGGAGTGGATGTAGAAAATTTAATTGTATGCCAACCTGATCATGGAGAGATGGCACTTGAGATTGCAGATCGCATGTGTAGATCTGGTGCTGTAGATCTCATTTGTGTTGATTCTGTCTCTGCTCTTACACCAAGAGCAGAAATCGAAGGTGAGATCGGTATGCAGCAAATGGGTTTGCAAGCACGCCTCATGAGTCAAGCTCTTCGTAAAATGTCTGGAAATGCCTCAAAAGCTGGTTGTACTCTCATATTTTTGAATCAAATACGATATAAGATTGGTGTGTATTATGGAAATCCAGAAGTGACGAGTGGAGGGATTGCACTGAAGTTCTTTGCCTCACTTCGACTTGAAATACGTCCTATTGGGAAGCTAAAGTCTGCTAAAGGAGATGAAGAAATTGGGATTCGAGTTCGTGTTAGAGTCCAAAAGAGCAAGATAGAAAAGTATCAAGGAAGAGGCAACAGAGGCGAGAGTCCCATGAAGAGATCGCTGACAATTGTGGATTCGGAGGTGGGAGATGAAAACCTAGAAGAGGAGTTGGCAGATGGTCGTGAGAAAAATGGAAATAGAAAAAGAGAAGTACCGGATGGAGCAGTCCGCACCCATCAATGTGCTGAGTATAAGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAGGTAAACTGGGTTGCATTTTAGATTGTGCTGAAATTATGGACATTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGATCACAGGTTGGGGCAAGGAAGAGACAGAGCTCTGCAATACTTAAAAGATAATCCTGCTCTTCAAGATGAAATTGAGAAGGCTGTGCAGACCATGCTGACAAGTGGAACTGTTCAAATGGGATTTCAATCTATTAGAAAGCCATTGCCGAACCAAGAAGAGGTACTTGAAGAGCTCGAATAA 1446 44.67 MDFVSNSLACKTLPCRTLFPPCATSSRRRQWLPSSLFNAGKRVRELRCEFEVNVNGALSSDFDPRSVDRKKALEAAMNEINSSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKLKSAKGDEEIGIRVRVRVQKSKIEKYQGRGNRGESPMKRSLTIVDSEVGDENLEEELADGREKNGNRKREVPDGAVRTHQCAEYKVSRPYKQAEFEIIFGEGVGKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKAVQTMLTSGTVQMGFQSIRKPLPNQEEVLEELE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29238328 29244220 - CaPI482276_11g016540.1 Cam11g1654 140576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1654 481 Gene3D - 98 322 IPR027417 -
Cam11g1654 481 CDD RecA 100 397 - -
Cam11g1654 481 ProSitePatterns recA signature. 276 284 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Cam11g1654 481 PRINTS RecA protein signature 371 400 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 PRINTS RecA protein signature 273 301 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 PRINTS RecA protein signature 425 442 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 PRINTS RecA protein signature 228 257 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 ProSiteProfiles RecA family profile 2. 262 400 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Cam11g1654 481 SUPERFAMILY RecA protein, C-terminal domain 397 452 IPR023400 -
Cam11g1654 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 315 IPR027417 -
Cam11g1654 481 ProSiteProfiles RecA family profile 1. 99 257 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Cam11g1654 481 Pfam recA bacterial DNA recombination protein 71 315 IPR049428 -
Cam11g1654 481 PANTHER RECA 52 465 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 Pfam RecA C-terminal domain 399 452 IPR049261 -
Cam11g1654 481 Hamap Protein RecA [recA]. 69 457 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 NCBIfam recombinase RecA 68 315 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cam11g1654 481 Gene3D - 396 453 - -
Cam11g1654 481 SMART AAA_5 120 291 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1654 K03553 - - csv:101216994 592.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0318 Cam-Chr4:11542428 Cam11g1654 Cam-Chr11:29238328 2.40E-46 dispersed
Cam11g1654 Cam-Chr11:29238328 Cam11g0181 Cam-Chr11:3360217 4.60E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g966 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01587 Cam11g1654 Cec11g1682 Cco11g1679 Clacu11g1811 Cmu11g1625 Cre11g2041 Cone6ag0287 Cone9ag0322 . . Lsi04g01865 . . Cme07g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .