Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1664 ATGGCCAGAACAGTGTGCTCTCACATCATTCCATCTCTTCTTCTCCCTTCAAAATCCTCCTTCTTCGGAACTCACTCTCTCTTCTCCAGAGCTTCTCATTTCAACCATGTTATGGTGGTTGGCCGACGCTTCTCTTCTGCATCCAAGATCAGCATGAGCCTCAGAGCCGGTATTGTTGGCCTCCCCAATGTTGGAAAATCTACTCTCTTCAATGCCGTCGTCGAAAATGGCAAGGCTCAAGCTGCCAACTTTCCTTTCTGTACAATAGAGCCAAATGTAGGAGTAGTTGCAGTTCCAGATCCTCGTCTCCATAAACTTTCTGATCTCAGCAAGTCTCAACGAGCGGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGTTAGTGAAAGGAGCCAGTCAGGGAGAGGGACTGGGAAATAAATTTTTATCCCATATTCGTGAGGTGGACTCAATACTTCAGGTTGTGCGCTGTTTTGAGGATAATGACATTGTTCACGTGAATGGGAAAATTGATCCAAAAACTGATATTGACGTGATTAACTTAGAGCTTGTTTTTTCAGATCTGGACCAGATTGAGAAAAGATTAGAGAAGGTCAAGAAAGGCAAGGCAAAGGATTCTCAGTCTAAAGTTAAGGAAGAAGCAGAGAAGTCTGCATTGGAAAAAATTCAGAAGGTCCTTCTGGATGGAAAACCAGCGCGATCAGCAACTTTAACAGATTTTGAAAAGGATGCTATAAAGCATCTTTGCCTGCTCACAATGAAACCGGTCATATATGTTGCCAATGTCGCAGAATCTGATATAGCGGAGCCTGCAAGTAATCCTCATGTTAAAGAAGTTATGGGTCTTGCATCAGAGTTGCAATCTGGAATAGTGACAGTTTCTGCACAGGTTGAGTCTGAGCTTTCTGAACTTCCGTCAGAAGAGAGGTTTGAATATTTAAAATCTCTTGGTGTAAGTGAAAGTGGCCTGGGAAATCTTATAAGGGCAACCTATAACCTATTGGGGCTCCGTACATATTTTACTTCGGGTGAAAAGGAAACAAAAGCCTGGACCATACTTACAGGAATGACTGCACCACAAGCTGCTGGAGTCATTCACTCAGACTTTGAGAGAGGGTTCATCCGTGCTGAGACGGTGGCTTATGATGATTTTGTTGCTGCGGGTTCATTTGCAGCAGCAAGGGAGAAAGGACTTTTGAGAGCTGAGGGTCGAAGACTTGCAGTTGATTTATCATTTTGGTATTTTTGGGGATTCTCACTGTTTGGGTTCGTCTTTTGTTGGTTAATGGGAGCCAGAACCAGTGATAAGGAGGCTCAAAATCTAGCATGGGCTAGCAAGGCTGATGGCAGCCCCAGCTCATTGCACCATGTGAAAATTTCCCAAGGTCTATGGACTCATTATCTGGGAGCTCTTGGCGTGGCCTTAAGCAAGGCTCTCTTAATGAAGTATGCTGAAATCCACACCTCAGCGCTTGTGGTGTGCGCCTCAATGCTTCAAGCATGA 1506 44.42 MARTVCSHIIPSLLLPSKSSFFGTHSLFSRASHFNHVMVVGRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGVVAVPDPRLHKLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKIDPKTDIDVINLELVFSDLDQIEKRLEKVKKGKAKDSQSKVKEEAEKSALEKIQKVLLDGKPARSATLTDFEKDAIKHLCLLTMKPVIYVANVAESDIAEPASNPHVKEVMGLASELQSGIVTVSAQVESELSELPSEERFEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAWTILTGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSFAAAREKGLLRAEGRRLAVDLSFWYFWGFSLFGFVFCWLMGARTSDKEAQNLAWASKADGSPSSLHHVKISQGLWTHYLGALGVALSKALLMKYAEIHTSALVVCASMLQA 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29325572 29335535 + CaPI482276_11g016640.1 Cam11g1664 140586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1664 501 SUPERFAMILY TGS-like 337 409 IPR012676 -
Cam11g1664 501 Gene3D - 56 336 IPR027417 -
Cam11g1664 501 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525(InterPro)
Cam11g1664 501 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525(InterPro)
Cam11g1664 501 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525(InterPro)
Cam11g1664 501 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525(InterPro)
Cam11g1664 501 PANTHER OBG GTPASE FAMILY 49 409 - GO:0005737(PANTHER)|GO:0016887(PANTHER)
Cam11g1664 501 Pfam Protein of unknown function (DUF933) 337 409 IPR013029 -
Cam11g1664 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 359 IPR027417 -
Cam11g1664 501 Gene3D - 100 406 IPR012675 -
Cam11g1664 501 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 336 IPR031167 GO:0005525(InterPro)
Cam11g1664 501 Hamap Ribosome-binding ATPase YchF [ychF]. 53 421 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Cam11g1664 501 FunFam Ribosome-binding ATPase YchF 165 255 - -
Cam11g1664 501 FunFam Obg-like ATPase 1 331 421 - -
Cam11g1664 501 Pfam 50S ribosome-binding GTPase 56 160 IPR006073 GO:0005525(InterPro)
Cam11g1664 501 NCBIfam redox-regulated ATPase YchF 52 409 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Cam11g1664 501 CDD YchF 56 335 IPR041706 -
Cam11g1664 501 Gene3D - 168 255 IPR023192 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1664 K19788 - - csv:101217443 745.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0822 Cam-Chr3:9655018 Cam11g1664 Cam-Chr11:29325572 2.20E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .