Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1667 ATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCGCCGTCGGGGTCGGGTTCCTCCTCACATTCCCGCTCATTCTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCGCGCTCCAGGTCTGCCTCTGTCTCCCGCTCCCGCTCTCGTTCCAGGTCCATTTCCTCGTCTTCGTCTCTTTCTCGCAGCGGTAGTTCTCGGAGCCGAAGCCCCCCTCCTCAGAGAAAGAGTCCGACTGAAACAGCTCGGCGGACTCGCGCTTCATCTCCACCAGCTAAACGAAGTTCTCCGCCACCCAGGAAATCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGACGCACTGAGTAGGAATGTCCACGAGGGTCATTTAAGAGAAATCTTCGGTAATTTTGGTGAAGTGGTCAATGTTGAGCTTGCAATGGATCGCACAGTGAACCTTCCTAAAGGATACGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAGATGCCAACACCTCCAAGGACTGTAGCAACCGTTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTCCTGATGCTGACAAGGATGACATGAAAAGACAGAGAGAACCCTCTCCTCGTCGAAAACCTCTTTCACCTAGAAGGCGCTCGCCTGTTGGTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCACGCCGTCGTCCGGAGTCTCCCCCACGTCGCCGTGTAGAATCTCCTTTTCGTCGCGATTCTCCTCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCCCCATCGCCTTTGGCAAGACGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGTCCTGTTCGAAGACGTTCACCACCACCTCCTAGGCGCCGAACACCACCTCGGCGTGCTCGTAGTCCTCCCAGAAGGTCTCCTGTAGTTCGTAGACGAAGCCGTTCACCTATTAGAAGACCAGCTCGATCACGTTCCCGATCATTTTCACCACGGAGAGGTCGGCCGGCAGCTGCTGGTAGACGTGGGAGATCATCATCCTACTCTGGGTCACCTAGTCCACGCAAGGTGGCCAGGAGGGTATCTCGCAGTCCAAGAAGGCCTTTGAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCTTGCAGTCAAGAACACAACGCAAACGACTCGCTCCAGCGACTTAGGAAGGAACTCTCGTCATATACAGAATGAACAGAGTTGCTTAAATTGA 1338 53.59 MAKPSRGRRSPPSGSGSSSHSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSSRSRSPPPQRKSPTETARRTRASSPPAKRSSPPPRKSSPVRESLVLHIDALSRNVHEGHLREIFGNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDADKDDMKRQREPSPRRKPLSPRRRSPVGRRGGSPRRQPDSPRRRPESPPRRRVESPFRRDSPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSFSPRRGRPAAAGRRGRSSSYSGSPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPLAVKNTTQTTRSSDLGRNSRHIQNEQSCLN 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29362179 29371929 + CaPI482276_11g016670.1 Cam11g1667 140589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1667 445 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 305 - GO:0000398(PANTHER)|GO:0005654(PANTHER)|GO:0005737(PANTHER)|GO:0061574(PANTHER)
Cam11g1667 445 MobiDBLite consensus disorder prediction 183 445 - -
Cam11g1667 445 CDD RRM_RNPS1 109 181 IPR034201 -
Cam11g1667 445 MobiDBLite consensus disorder prediction 249 280 - -
Cam11g1667 445 FunFam Serine/arginine-rich splicing factor SR45 3 192 - -
Cam11g1667 445 SUPERFAMILY RNA-binding domain, RBD 93 200 IPR035979 GO:0003676(InterPro)
Cam11g1667 445 MobiDBLite consensus disorder prediction 207 232 - -
Cam11g1667 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723(InterPro)
Cam11g1667 445 Gene3D - 12 191 IPR012677 -
Cam11g1667 445 Pfam RNA recognition motif 111 179 IPR000504 GO:0003723(InterPro)
Cam11g1667 445 MobiDBLite consensus disorder prediction 402 445 - -
Cam11g1667 445 MobiDBLite consensus disorder prediction 300 361 - -
Cam11g1667 445 SMART rrm1_1 108 181 IPR000504 GO:0003723(InterPro)
Cam11g1667 445 MobiDBLite consensus disorder prediction 10 89 - -
Cam11g1667 445 MobiDBLite consensus disorder prediction 1 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1667 K14325 - - csv:101216970 276.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1318 Cam-Chr3:26957458 Cam11g1667 Cam-Chr11:29362179 4.50E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .