Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1752 ATGGAGATGTCTAACGACTCATCGATCAAGAAACCGAAGAGGTTGACATCGGTAGTTTGGAATCACTTTGAGAGGGTCAGAAAGGCTGACATTTGTTATGCTGTTTGTGTGCATTGCAACAAGAAGCTCAGTGGCTCAAGTAATAGCGGAACAACACATCTAAGAAATCACTTGATGCGATGTCTAAAAAGATCCAATTATGACGTTTCTCAACTACTTGTGGCCAAGAGATTAAAAAAGGACAATTCAAGTGGTCTTGCAAACATCAGCTTTGATGAAGGGCAGAGAAAAGAAGAGTTTAAATCAGCAATTGTGAAATATGATCCGGATCAGAGAAGGGATGAAGTGGTCACCATTGCAAGTGGTAAGTTTGATCAGGAGCGGAGTCAGAATGATCTTGCTCGTATGATCATATTGCATGGTTATCCATTGTCTATTGTTGAGCATGTGGGGTTTAAAGTTTTTGTCAAAAACGTTCAGCCGTTGTTTGAGGTATTACCCAATAGCACTGTTGAGCTTTCTTGTATGGAAATCTATCAGAAGGAGAAAGAGAAGATTTTTGAAACTATTAATAGATTGCAGGGTAGAATTAACGTTTCAGTTGAAATGTGGTCTTCATCAGAAAATATTGATTATTTATGCTTGACTGCACATTATATTGACGAGGATTGGAAATTACAGAAGAAGCTTTTGAATTTTATCACACTTGATTCTTCTCATACAGAGGACATGCTCTCAGACGTGATTATTAAATGCCTGATGGACTGGGACATTGACTGTAAGCTATTTGCACTGACATTTGATGATTTTTCAACCAATGACGAGATAATCAGAAGAATTAAAGAACACATATCGAAGAAAAGGCCTCTTTTGAGTAATGGTAGACTATTTGACATATGCTCTGCTGCACATACCATGAATGCAATTGCTGAAGACGTGATAGAAGCGATGCGAGAGGTTAACCAAAAGATCCGAGGGAGTTTTAAATATATCAGAAGTTCACAGCTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAGTAGGGATCTCCAGTCAGAAGATATTGGTCCCTGACAGTCCTGGTCAATGGAATTCAACATATTTCATGCTCGAGACAGCCGTGGAATACAAGGGTGCATTTGAACTTCTTCAAAAGCATGATCCTCATTATGCATCAGCTCTTACTGCTTTAGAGTGGGAATGGACAACTAGTGTTGCTGACTATTTGAAACTGTTTGTCGAAATCGTGAACATCTTCTCTGGCAACAAATCTCCTACAGCAAATATATATTTTCCTGAGATATGCGATGTTCACATTCAATTAATCGAGTGGTGTAAGAGCTCGGATAATTTTCTCAACTCCCTTGCATCGAAGTTAAAGGCCAAGTTTGATAAATATTGGAGCAAATGCAGTCTGGCTTTGGCAGTTGCTGCAGTTCTAGATCCAAGGTTCAAAATGAAATTGGTAGAGTACTACTATTCACAGATTTATGGTAGTACGGCCTTGGATCGGATTAAGGAAGTTTCTGATGGTATCAAGGAACTTTATGATGCATATTCAATCTGCTTTACAATGGTTGATCAAGGTTCAGCTTTGCGTGGAAGCAGCTTACCTGGGACGAGCAACGACTCTAGGGACAGGCTAAAAGGATTTGACAAGTTCCTTCATGAGACTTCCCAAGATCCGAGGCCATTGTCTACTGCTTCGTACATACCACTTCTGCTCGGAACCAATTAA 1740 39.77 MEMSNDSSIKKPKRLTSVVWNHFERVRKADICYAVCVHCNKKLSGSSNSGTTHLRNHLMRCLKRSNYDVSQLLVAKRLKKDNSSGLANISFDEGQRKEEFKSAIVKYDPDQRRDEVVTIASGKFDQERSQNDLARMIILHGYPLSIVEHVGFKVFVKNVQPLFEVLPNSTVELSCMEIYQKEKEKIFETINRLQGRINVSVEMWSSSENIDYLCLTAHYIDEDWKLQKKLLNFITLDSSHTEDMLSDVIIKCLMDWDIDCKLFALTFDDFSTNDEIIRRIKEHISKKRPLLSNGRLFDICSAAHTMNAIAEDVIEAMREVNQKIRGSFKYIRSSQLTQGRFNEMAHQVGISSQKILVPDSPGQWNSTYFMLETAVEYKGAFELLQKHDPHYASALTALEWEWTTSVADYLKLFVEIVNIFSGNKSPTANIYFPEICDVHIQLIEWCKSSDNFLNSLASKLKAKFDKYWSKCSLALAVAAVLDPRFKMKLVEYYYSQIYGSTALDRIKEVSDGIKELYDAYSICFTMVDQGSALRGSSLPGTSNDSRDRLKGFDKFLHETSQDPRPLSTASYIPLLLGTN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30080716 30082817 - CaPI482276_11g017520.1 Cam11g1752 140674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1752 579 SMART bed5 14 64 - -
Cam11g1752 579 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Cam11g1752 579 Pfam BED zinc finger 17 61 IPR003656 GO:0003677(InterPro)
Cam11g1752 579 Pfam hAT-like transposase, RNase-H fold 421 520 IPR025525 GO:0003677(InterPro)
Cam11g1752 579 SUPERFAMILY Ribonuclease H-like 184 550 IPR012337 -
Cam11g1752 579 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677(InterPro)
Cam11g1752 579 Coils Coil 176 196 - -
Cam11g1752 579 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 10 492 IPR052035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1752 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2259 Cam-Chr9:37147601 Cam11g1752 Cam-Chr11:30080716 4.20E-163 dispersed
Cam11g0336 Cam-Chr11:4970664 Cam11g1752 Cam-Chr11:30080716 4.70E-80 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g29 . . . . . . . . . . . . . Car09g00597 . Cpe06g00527 . . . . . . . . Cla11g01688 Cam11g1752 Cec11g1776 Cco11g1777 Clacu11g1912 . Cre11g2133 . . . . Lsi04g01979 . . . . . . . . . . . . . Cmo09g00658 . . . . . . . . . . . . . . . . . . . . . . Chy07g00984 Cme07g01359