Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1760 ATGGATTTTTGTATTTGGAGATTGAAGAGTGTTTGTGTATTGCTGCTTTTCAGCTGCTTCTTCCACTTTAGATCTCATGCCCAACCTTTACCTCAACAAGAAGTGAGAGCCCTCGAAGAAATATCTACAAAGTTAAAGAACTTAAACTGGAAAGTGCATCAAAATTCTTGCATTAATGGCGATGGCTTTTCCAATCTATTTATCAGTTCCACTAATTTGAGAGAGGTCAATTGCACTTGTACCACTATTTGCCACGTCACCAGCATACGGCTAAAAGGTCTTAATCTAGTTGGAGTTCTGCCCGTAGAGTTTGCAAATCTGACTCAACTCCGGGATTTAGATCTCACTTACAATTTTATTTCTGGATCAATCCCAAGACAATTTGGTCGCATTCCTCTCCTTACGTTTTCCATAATTGGAAACCGACTCAGCGGTGAGATTCCTCCTGAAATTGGTGATATTGCTTCACTTGAGGAACTGATCTTGGAAGACAATCAGATTGGAGGAAATCTTTCTGAAAATCTCGGAAAACTAACCAGCTTACGTCGATTACTTGTTTCTTCAAATAATATTACAGGGTCGATTCCAGAATCTTTTCGAAACTTGAGGAACTTGACTGAATTTCGGGTGGATGGAACTAACATATCAGGAAAGATACCTCAATATATTGGCAACTGGACCAAACTTCTTAAATTGGTCTTGAGAAATTGTTTAATCGAGGGTCGTATTCCTGAATATATTGGATCGTTTAATGAATTAAGAACTTTAGATCTAAGCTTCAACAGATTAAGTGGTCCAATTCCAGAAACATTTCAAAATCTATTCATCCAAAAAACTGCCTTCATGTTTCTGAATAACAACTCCTTAATCGGGCAAGTACCGAGTTGGATTATTGCCCAAAGTGGCAGCAGCAATAGAAACATAGATTTATCTTACAACAATTTTACAGGAATAAGCGATTTTAGTTGTACACAGTCTAATAATATTAACTTGGTTTCAAGTTCTACCGCAAAGAATAAAAGTGATGGTTGGTGCCAAATGAAGGATCTCCCTTGCTCTACAAAACCTCAATTTGATTCATTGTTCATTAATTGTGGAGGAGGAAGTATGGAATTTAATGGTAGTAGATATGAAGGGGATGATACTCAAGGTGGGAAAGCCAATTTCTTTTTCTCAACACAAAGATGGGGTTACACTACTACTGGTGTTTCATTGCTAAATGATCACCTTCCTTTCAAACTATCATCTACCAATTCCTCTGTTTCTTCTTCTTCTTCTTCTTCTTCACCAACCCTCTATTCCACTGCTAGACTTTCCCCTCTTTCTCTCAATTACTATGGCCTTTGCCTCATCAGTGGAAGCTACAATGTCAAGCTTCACTTTGCTGAAATTTTGTTTACTCCTGACCAAACTTATACCAGCCTCGGAAGACGTATTTTCGATATCTCCATTCAAGGAAAGTTGATTAAGAAGGATTTTAACATAGCGGAGGAAGCTGGAGGTGTTGGTAAAGAGTTTATTTTAGAAGTGCCTAATGTTATGGTCAATAATGGAAGTAGTACTCTTGAGATCTCCTTGTATTGGGCTGGTAAAGGAACAATTTACATTCCATACTTAGGGGTGCATGGACCTCTGATATCTGCAATCACCGTCACACCAAACTTCAAAGTGGAAACTAATGTGGAAACTAGAGGGCTACCGGCTGGAGCTACTGCTGGCATTGTTGTTGGTATTTTCGTCTTTGTCGTCCTAGTATTTGTTGTTCTTCGATGGAAGGGTTATTTAGGCAGAAAGGAAACCGAAGACGATGAACTTCGAGACTTGAAATTACAAACAGGTTATTTCAGTTTAAGACAAATCAAAGCAGCCACCAACAGCTTTGACCCTGCTAATAAGATTGGGGAGGGAGGCTTTGGTCCTGTCTACAAGGGAGTACTATCAGATGGCACTTCAATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAATTCATCACAGAAATTGGGATGATTTCTGCGTTACAACATCCAAATCTTGTTAAGCTTTATGGTTGCTGTATTGAAGGAAACCAATTGTTGCTTATTTATGAGTATCTACAGAACAATAATCTTGCTCGAGCACTTTTTAGCCCTGAGAAACATTCCTTGCATTTGGATTGGCCAATAAGAATGAAGATATGTTTGGGAATAGCAAAAGGGTTGGCTTACCTTCATGAAGAATCAAGATTGAAAATTGTTCATAGAGATATAAAAGCTACTAATGTTCTACTTGATGGAAACTTGAATGCCAAGATCTCTGATTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACTCATATTAGCACAAGAATTGCTGGCACAATTGGTTATATGGCTCCTGAATACGCAATGAGGGGTTATTTGACTGATAAAGCTGACGTTTATAGCTTTGGAGTGGTGGCATTAGAGATTGTTAGTGGTAAAAGTAATACGAATTACAGACCGAAAGAGGAATTTGTTTATCTTCTTGATTGGGCTTGTGTTCTACAAGAGGAAGGGAACTTACTTGAACTTGTTGATCCAAATCTTGGCCAACATTACTCAAAAGAGGAGGTCATGAGGATGCTTCATATAGCTCTCTTGTGCACAAACTTGTCTCCAAGTCTCAGACCATCCATGTCTTCTGTGGTTAGCATGCTTGAAGGTAAAATCGCAGTCGAAGTATCGAACATCAAGCGCAACACGACCGGTCGAGATGCAAGGTTCAAAGCATTTGATCATAAACTGTCACGAGATAGCCTAACAAGCATTTCGACCTCGTCGCAATTGCAAGGCATTGAGACGCAAAAAAGCATGTTAATGGATGGGTCATGGATTGACTCATCATCTACTTTTACTCAAGACAGAGACAATGCTCGAGAGCATTCTTCAACAAGAAGTCTCCTTACAGATTGA 2949 38.96 MDFCIWRLKSVCVLLLFSCFFHFRSHAQPLPQQEVRALEEISTKLKNLNWKVHQNSCINGDGFSNLFISSTNLREVNCTCTTICHVTSIRLKGLNLVGVLPVEFANLTQLRDLDLTYNFISGSIPRQFGRIPLLTFSIIGNRLSGEIPPEIGDIASLEELILEDNQIGGNLSENLGKLTSLRRLLVSSNNITGSIPESFRNLRNLTEFRVDGTNISGKIPQYIGNWTKLLKLVLRNCLIEGRIPEYIGSFNELRTLDLSFNRLSGPIPETFQNLFIQKTAFMFLNNNSLIGQVPSWIIAQSGSSNRNIDLSYNNFTGISDFSCTQSNNINLVSSSTAKNKSDGWCQMKDLPCSTKPQFDSLFINCGGGSMEFNGSRYEGDDTQGGKANFFFSTQRWGYTTTGVSLLNDHLPFKLSSTNSSVSSSSSSSSPTLYSTARLSPLSLNYYGLCLISGSYNVKLHFAEILFTPDQTYTSLGRRIFDISIQGKLIKKDFNIAEEAGGVGKEFILEVPNVMVNNGSSTLEISLYWAGKGTIYIPYLGVHGPLISAITVTPNFKVETNVETRGLPAGATAGIVVGIFVFVVLVFVVLRWKGYLGRKETEDDELRDLKLQTGYFSLRQIKAATNSFDPANKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLQNNNLARALFSPEKHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDGNLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWACVLQEEGNLLELVDPNLGQHYSKEEVMRMLHIALLCTNLSPSLRPSMSSVVSMLEGKIAVEVSNIKRNTTGRDARFKAFDHKLSRDSLTSISTSSQLQGIETQKSMLMDGSWIDSSSTFTQDRDNAREHSSTRSLLTD 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30158531 30169751 + CaPI482276_11g017600.1 Cam11g1760 140682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1760 982 Pfam Protein tyrosine and serine/threonine kinase 631 897 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1760 982 Gene3D Transferase(Phosphotransferase) domain 1 703 921 - -
Cam11g1760 982 FunFam Leucine-rich repeat receptor protein kinase EMS1 100 196 - -
Cam11g1760 982 SMART LRR_typ_2 178 201 IPR003591 -
Cam11g1760 982 SMART LRR_typ_2 107 130 IPR003591 -
Cam11g1760 982 SMART LRR_typ_2 250 273 IPR003591 -
Cam11g1760 982 MobiDBLite consensus disorder prediction 962 982 - -
Cam11g1760 982 SUPERFAMILY L domain-like 64 345 - -
Cam11g1760 982 CDD STKc_IRAK 633 900 - -
Cam11g1760 982 FunFam Leucine-rich repeat receptor protein kinase EMS1 197 296 - -
Cam11g1760 982 Gene3D Phosphorylase Kinase; domain 1 594 702 - -
Cam11g1760 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1760 982 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 358 554 - -
Cam11g1760 982 Pfam Malectin domain 361 549 IPR021720 -
Cam11g1760 982 Pfam Leucine Rich Repeat 180 202 IPR001611 GO:0005515(InterPro)
Cam11g1760 982 Pfam Leucine Rich Repeat 253 274 IPR001611 GO:0005515(InterPro)
Cam11g1760 982 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515(InterPro)
Cam11g1760 982 ProSiteProfiles Protein kinase domain profile. 627 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1760 982 SMART serkin_6 627 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1760 982 FunFam Putative LRR receptor-like serine/threonine-protein kinase 703 910 - -
Cam11g1760 982 Gene3D - 360 554 - -
Cam11g1760 982 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 596 702 - -
Cam11g1760 982 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 922 IPR051824 -
Cam11g1760 982 Gene3D Ribonuclease Inhibitor 8 350 IPR032675 -
Cam11g1760 982 SUPERFAMILY Protein kinase-like (PK-like) 611 902 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g1758 Cam-Chr11:30122670 Cam11g1760 Cam-Chr11:30158531 2.70E-203 dispersed
Cam11g1759 Cam-Chr11:30146808 Cam11g1760 Cam-Chr11:30158531 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85602 PF07714 PK_Tyr_Ser-Thr 3.40E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1760 - - - 0.0