Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1785 ATGTCGCATTCTGGGAATCCCATTTCCGACCTTCGCTTTGATCATCTTTCCGATCGGTTTCGTGATTCCGTGAGTTGTGAAGTAAACAAACCCGACTTTCGTGAGTTAGATCTGGGTTCCCCTGTTTCGCCATTGCGCACTCGCCATCAGACTGGCGGCGGCCCCGCTGCTAGTAGTAGTTCCAGCTCCTCCGGATCGGTTTCTGGCCGGAATGGACCGAACCCAGTTGCTAAAAGATCCGATTCGGGTCCTAATAATCACTCTGGTGAGCTCTCTGGGTCTAGCGAGAGCAGCCCAACCGCCGCGGAGAGCCTCCGATCCATCGGAACCCCTAAGAATTTCAAGTCGGGTCATAATAGATCCGATTCTGCCTCTAATCATCCATTAATCTATTCGGGTCAGTCTCAAAGTTCCGTTACTTCTCCCTCCAATGTGCTTCCCACTGGCAATATTTGCCCTTCAGGAAGGATCTTGAAGACGAGCATGCCGTCAACGAATCGGAGCTCGAGGACTGATGTCTTGGGTTCTGGGTCGGGAAATTACGGCCATGGGAGCATAATGCGGGGACTCGGTGGTGTCAAAACCGGCGCTGTCGAATCGGTTAGCAATGTCAGTTCGAGGGCCAGTGGAGGTGGTGGTGGAGACTCGTTGAAGAGGGTGAAACAGAGTGGGGATCCGGAGGAGTTGAAGAGGGCTGGAAATGAGCAATACAAAAAGGGGCATTTTGCTGAGGCTTTGAGTCTTTACGATCGAGCCATTGCAATTTCTCCGGCCAATGCAGCTTACCGGGGCAACCGAGCAGCTGCCTTGACTGGTCTCGGGCGGCTCGGGGAGGCGGTAAGCGAGTGCGAGGAGGCTGTGAGATTGGATCCCAATTATATTCGTGCTCATCAGCGTTTGGCATCTCTGTTTCGTAGGTTAGGACAGGTAGAGAATGCTAGGAAACACCTTTGTTTTCCGGGTGTGCAGCCGGATCCGAATGAGCTGCAGAGATTGCAGGTAGTAGAGAGGCATATAAGTAGATGTGGGGATGCCCGTCGAGTTAGAGATTGGAGAAGTATGTTGAAGGAGGCAGATACTGCAATTTCTGTTGGTGCTGATTCTTCACCTCAGCTGTTTATGAGTAGAGTGGAAGCTCTTTTAAAGCTTCATCAGATTGAAGATGCTGAATCCAGCCTATTTAGCATTCCGAAGCTACATCCATCGACCAACTCGTGCTTACAAACAAAGTTTTTCGGAATGCTTTCAGAAGCATACTCTCACTTCATTCATGCCCAAATTGAGATGGCGTTGGGAAGGTTTGAGAATGCAGTTACGGCTGCTGAGAAAGCTGGGCAGATTGATGCTCGGAATGTAGAAGTGGCAGTGCTGCTTAATAATGTGCGCTTGGTTGCTAGAGCTCGTACCAGGGGCAATGATCTTTTTAAATCAGAAAGGTATACCGAAGCTTGCTCAGCTTATGGGGAAGGCCTTAAGCTCGACCCTTCAAACTCAGTTCTCTACTGCAATCGAGCAGCCTGTTGGTTTAAACTTGGGATGTGGGACCGGTCCATCGAAGACTGTAATCAAGCATTACTTATCCAACCAACTTACACGAAAGCCCTCCTTCGAAGGGCTGCCTCAAATAGTAAGCTTGAAAAGTGGGAGGAGGCTGTTAGAGATTATGAGGTTTTGAGGAGGGTGCTTCCAGATGACAATGAAGTTGCCGAGTCTCTATTTCATGCCCAAGTTGCATTAAAGAAATCTCGAGGGGAAGAAGTTCATAATCTGAAATTTGGTGGCGAAGTAGAGGAAGTGTCAAGCCTAGATCAGTTCAGAGCTGCCATATCGTTCCCAGGCGTCACTGTGGTTCATTTCAAAGCAGCATCTGATTTACAATGCAAGCAAATATCGCCATTCGTGGATATTCTTTGTCGTCGCTACCCTTCCATTAATTTCCTCAAGGTGAATCTTGAAGAAAGTCCAGCAATTGCAGATACTGAAAACGTAAGGATTGTACCGACATTCAAGATTTACAAAAGCGGCAATCGAGTGAAAGAGATCATATCTCCGACTCGCGACATGTTGGAGCACTCAGTGAGGTATTATAGCTTATAG 2097 48.55 MSHSGNPISDLRFDHLSDRFRDSVSCEVNKPDFRELDLGSPVSPLRTRHQTGGGPAASSSSSSSGSVSGRNGPNPVAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPKNFKSGHNRSDSASNHPLIYSGQSQSSVTSPSNVLPTGNICPSGRILKTSMPSTNRSSRTDVLGSGSGNYGHGSIMRGLGGVKTGAVESVSNVSSRASGGGGGDSLKRVKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAISPANAAYRGNRAAALTGLGRLGEAVSECEEAVRLDPNYIRAHQRLASLFRRLGQVENARKHLCFPGVQPDPNELQRLQVVERHISRCGDARRVRDWRSMLKEADTAISVGADSSPQLFMSRVEALLKLHQIEDAESSLFSIPKLHPSTNSCLQTKFFGMLSEAYSHFIHAQIEMALGRFENAVTAAEKAGQIDARNVEVAVLLNNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGMWDRSIEDCNQALLIQPTYTKALLRRAASNSKLEKWEEAVRDYEVLRRVLPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEEVSSLDQFRAAISFPGVTVVHFKAASDLQCKQISPFVDILCRRYPSINFLKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIISPTRDMLEHSVRYYSL 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30333930 30336912 - CaPI482276_11g017850.1 Cam11g1785 140707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1785 698 CDD TRX_family 603 682 - -
Cam11g1785 698 FunFam TPR repeat-containing thioredoxin TTL4 590 697 - -
Cam11g1785 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 29 690 IPR044534 GO:0005737(PANTHER)
Cam11g1785 698 Gene3D Tetratricopeptide repeat domain 224 582 IPR011990 GO:0005515(InterPro)
Cam11g1785 698 MobiDBLite consensus disorder prediction 26 180 - -
Cam11g1785 698 Pfam Tetratricopeptide repeat 500 531 IPR019734 GO:0005515(InterPro)
Cam11g1785 698 SUPERFAMILY Thioredoxin-like 501 690 IPR036249 -
Cam11g1785 698 MobiDBLite consensus disorder prediction 203 233 - -
Cam11g1785 698 SMART tpr_5 260 293 IPR019734 GO:0005515(InterPro)
Cam11g1785 698 SMART tpr_5 418 451 IPR019734 GO:0005515(InterPro)
Cam11g1785 698 SMART tpr_5 498 531 IPR019734 GO:0005515(InterPro)
Cam11g1785 698 SMART tpr_5 226 259 IPR019734 GO:0005515(InterPro)
Cam11g1785 698 SMART tpr_5 532 565 IPR019734 GO:0005515(InterPro)
Cam11g1785 698 SMART tpr_5 464 497 IPR019734 GO:0005515(InterPro)
Cam11g1785 698 Pfam Tetratricopeptide repeat 232 293 - -
Cam11g1785 698 MobiDBLite consensus disorder prediction 44 178 - -
Cam11g1785 698 Gene3D Glutaredoxin 583 694 - -
Cam11g1785 698 Pfam Thioredoxin 603 686 IPR013766 -
Cam11g1785 698 SUPERFAMILY TPR-like 225 453 IPR011990 GO:0005515(InterPro)
Cam11g1785 698 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1785 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1124 Cam-Chr9:11637076 Cam11g1785 Cam-Chr11:30333930 1.30E-191 dispersed
Cam11g1554 Cam-Chr11:28351347 Cam11g1785 Cam-Chr11:30333930 4.30E-101 dispersed
Cam11g1785 Cam-Chr11:30333930 Cam09g2255 Cam-Chr9:37113115 1.10E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .