Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1787 ATGGATTTCCAGGATGATGGCTTTGAGGGATCTGCAAGCGAAGACATTATTTTTAGGGAGGTTTTCTTTGGCAACAGCTCTAGCCATTCCAATAGGAGGTGTCCTCACAAGGTAGTTAGTTATGAATGCGGGCCCTGTAAAATTAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCAACAGTGTCTAGTTATTCATACTCAAGAAATATAAAGCTTGATGAATGTTACAATGCTACGGAGAATATTAGGACCAGTTCTGCACCTAATAGTCTGCCATGCAAATGGACTTCAGTGGAAGGCGACAACGTGAATGCAAGTGCTAAGCGAATAAAACTGTCAACTGATGAAGCCTCTGATTCTGTACCCAATCTAGTTAAGGTTATGAAATCATCAGATGGTATAAGAGAACCTGTTTCCACTAATTGCTGTCCAGCTGAGGACTGTGATTCTGAATCATTTACATTCCACATTGTAGAATCTTCTAGACAGGGAATTATATCAAGTTGCTATCTGCTTAAGCACTTTGTTGAAAGGGACAATAATCTGGGTGATCCCAATGCCTCCAAACGAACATCACTGAATTTAGAAGGTAACGATGAACCCAATGTGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTAGCAAGTCCTGATACACTCAACGAGAAGTTTGGATCTCCACTACATCTAGAGGTAGGACAAATGAAATTTCTATGTCCAGAACTGGATACTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCTCTTCTCCACTACCATGTTGTTCACCTGTTTATTGCAGCTGGATGGTCTATTGAAAGGGTCAAAAGACCTTGCCGGCGTTATATGGAAACGATGTACAGGTCACCCCAGGGAAGAGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTTCTGTTTGCTGATAAGTGTAGTTTTGCAAAGAAAGTTGACAGCAGAGAATGGACTGGCATTCATCAATTCTTATTTGATCTTTCTGACACATTGTTACAGGTTGGGAAGGAAATGAATCAATTAGGGGCTACAACTTCATTGGCTCATTGCTGGGCTATTCTAGATCCCTATGTGGTGGTTGTGTTCATTGACAGAAAGATCGGTACCCTTAGGAAGGGAGATTTAGTTAGAGCTACCTGTAGTATTGGGGTTAATGGGAACAATAAGACCGATACTTTCGTGACATTAAAAAATGAAGACAGTAGTATTTGTAACCTATCTGCTGACAAAAACCCGTCACCACCACATGATAATTCACCATCTGCCAAGAGTGCATTGACAGAGGCGGCATTAAAAGATCTTGATGGGGGCAATTGTGCTTTTGATGAGCAAATCTGTGATACAAGTTTCTCCAATTACTATGGGCATACTGAAGATGGAACAATGAACTTTCCGACAAAGGTGTCTAATTATGACCCCAATTTGGGGAACAGTCTGAATTGCATGGGCAGTCATTGTAATGAACCTGGAAACAAGATAGACACTGAGGATTTAACTTCATTACCTGCTTATTTTTCAGGCTCCACCTGCAAACCTAGATGTCTGGCTGATGGTCCTGTTCCATCTGGAAATTCAGATAATGTTGTCAGAATTTCTGGCCTTACATCTCCCGATGAGGATAGCACTTTGTGTTGTTCGGATGAACAAAGCTCTGAAAATCATGTTGAAAAGCCTAATGAAATGGTGAAAAATGTACTGACGTGTTCCCTAGTAGAAGAAAAAAAGGTGGAAGTCCCACTTGATGATAAGGTGGAGAATAATTTGGAAGAATCTCTGAATGACTGTCCAAACTATACAAGTGACGATTTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATGAAGAAGGTGGGCTGCACTTTTCAGCTTCAATGTTCAAAACAGAGAATAAAGTTTCTGCTACACATTCTATTTTGAAGAAGAAAGGACGTCGAAAGTGTAAAAAGATATCTGAAATTAAACCTACCTTGCCACCTCATATTGATATTGTGAGTGTGACTCCTGGAAAGAAAACTGAGTTGTGGGATATTGATGGGAATTGCTCTCAGTTAGATATGATAGAAGACCAGAAGTCCCATATAGCTGATACTAAAAACGTGGACGATCATGAGAAGAGCTTGTCTCTCAGTCCTGTTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAATAAGAATTTTGACAGTCTTAAAGGTTCAAAAACCAGAAAGAAAAAATCGAATGAATGTCAAATTGAAGATGACGATCTATTAGTTTCAGCCATTATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATCTTCCCATGTAAGGAAATACTTAAAATCTAAAGCAAAAATGAACCGCAAAAGACAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCATAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCGAATGATATAATCCAATACCAAAGCCCTAAGGATGACAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATCTGCAATTGCTGCGGTGAGCTACTCTCAATATCTGAATTTAAAAGTCACGCAGGTTTCAAATTTAATCGCCCTTGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACTGTTCAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATCTGCTGTGATAATTGCCCTTCTACATTCCATCATTCTTGTTTGTCAGTTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAATTGTACATGCCAGATATGTGGTGGTCTTGTGAATTATGAAGAGACTTCAAGTTCGTCTGATGCGCTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCGATGCCTGAAACAAAAAGACATCGATTCTGGAGTAGAATCTCATGTTTGGTTTTGTAGTGGGAGTTGCCAGAAGATTTACACAGCTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCAAATGGGTTTTCATGGATGCTTCTTAGATGCATTCATAACGACCAGAAAATTCTGTCTACCCCACGCTTAGCTATGATGGCAGAATGTAATTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGGACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACTGTGATACTAGAGAAAGATGATGTGCTGCTATGCGTAGCTTCTATCAGGGTACATGGATCAGAAGTGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGACGCCAAGGAATGTGTAGGCGTCTACTGAATGCTATTGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACTGAAGGTTTTGGCTTTGTACCTGTGGAAAATGATGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCCGGAACAATACTCCTAAAGAAGGCTCTGTATTTAAGTGGCCAAAATACAGAGACAACAGAAGGAATTCATTCAGGAGTACAACTTGACACCGATGCTAAACGACAATGCAATTCCAACGAAGCATGTCCTAGAATGGAAATAAAATGTTCAAAATATGAATTGCAAGAACACAATCATGAAAAGATGATGGACGACCACGAAGGAAATCCAGCTCTTCCGATTGATTCATCTACGTTGCAGGTGGTTGAATCAAATGGAATGGATACTTCTTCAGGACAAAAGTCTGTTGAGTCAGTACCTCAACCTGATGGAAACTATTGCACTGACATAGTTGGTGCCACAACCGAAACCCGCACGCACGAGGGGAAAGAGTCATTAGAAGTAGAAGTTGGCGCAAAACGTGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTCCATGCAGCCACGATGACAAGATTTGTAGAACCTGTTGTTCTAACTTAG 4197 40.86 MDFQDDGFEGSASEDIIFREVFFGNSSSHSNRRCPHKVVSYECGPCKINDASLCSSSELSTVSSYSYSRNIKLDECYNATENIRTSSAPNSLPCKWTSVEGDNVNASAKRIKLSTDEASDSVPNLVKVMKSSDGIREPVSTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVERDNNLGDPNASKRTSLNLEGNDEPNVVNKVSASPVSQESSMTRLLVASPDTLNEKFGSPLHLEVGQMKFLCPELDTSLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETMYRSPQGRAIREFSKAWRVCGELLFADKCSFAKKVDSREWTGIHQFLFDLSDTLLQVGKEMNQLGATTSLAHCWAILDPYVVVVFIDRKIGTLRKGDLVRATCSIGVNGNNKTDTFVTLKNEDSSICNLSADKNPSPPHDNSPSAKSALTEAALKDLDGGNCAFDEQICDTSFSNYYGHTEDGTMNFPTKVSNYDPNLGNSLNCMGSHCNEPGNKIDTEDLTSLPAYFSGSTCKPRCLADGPVPSGNSDNVVRISGLTSPDEDSTLCCSDEQSSENHVEKPNEMVKNVLTCSLVEEKKVEVPLDDKVENNLEESLNDCPNYTSDDLSHSCASGVVQKSSQNEEGGLHFSASMFKTENKVSATHSILKKKGRRKCKKISEIKPTLPPHIDIVSVTPGKKTELWDIDGNCSQLDMIEDQKSHIADTKNVDDHEKSLSLSPVSCHSERKGSKFNKNFDSLKGSKTRKKKSNECQIEDDDLLVSAIIRNKDVSSSAAGSSHVRKYLKSKAKMNRKRQKSSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIICNCCGELLSISEFKSHAGFKFNRPCLNLFLDSGRPFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSVQELPEGNWYCLNCTCQICGGLVNYEETSSSSDALKCSQCEQKYHGRCLKQKDIDSGVESHVWFCSGSCQKIYTALQSRLGLINQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEVAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFVPVENDEKQSLHRFNLMVFPGTILLKKALYLSGQNTETTEGIHSGVQLDTDAKRQCNSNEACPRMEIKCSKYELQEHNHEKMMDDHEGNPALPIDSSTLQVVESNGMDTSSGQKSVESVPQPDGNYCTDIVGATTETRTHEGKESLEVEVGAKRDIQLSEGKSWDEGVHAATMTRFVEPVVLT 1398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30375363 30387830 - CaPI482276_11g017870.1 Cam11g1787 140709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1787 1398 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1134 1219 IPR016181 -
Cam11g1787 1398 CDD NAT_SF 1139 1199 - -
Cam11g1787 1398 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1081 1245 IPR000182 GO:0016747(InterPro)
Cam11g1787 1398 ProSiteProfiles Zinc finger PHD-type profile. 945 990 IPR019787 -
Cam11g1787 1398 SUPERFAMILY FYVE/PHD zinc finger 988 1039 IPR011011 -
Cam11g1787 1398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 938 989 IPR013083 -
Cam11g1787 1398 SMART PHD_3 989 1043 IPR001965 -
Cam11g1787 1398 SMART PHD_3 947 988 IPR001965 -
Cam11g1787 1398 CDD PHD2_CHD_II 947 987 - -
Cam11g1787 1398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 990 1047 IPR013083 -
Cam11g1787 1398 PANTHER PHD FINGER FAMILY PROTEIN 106 1291 - -
Cam11g1787 1398 FunFam Increased DNA methylation 1 938 990 - -
Cam11g1787 1398 MobiDBLite consensus disorder prediction 1320 1341 - -
Cam11g1787 1398 Gene3D - 1118 1232 - -
Cam11g1787 1398 SUPERFAMILY FYVE/PHD zinc finger 925 988 IPR011011 -
Cam11g1787 1398 Pfam Tify domain binding domain 870 920 IPR032308 -
Cam11g1787 1398 Pfam PHD-finger 948 987 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1787 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2259 Cam-Chr5:30773406 Cam11g1787 Cam-Chr11:30375363 1.80E-78 dispersed
Cam06g0621 Cam-Chr6:8452808 Cam11g1787 Cam-Chr11:30375363 2.00E-109 dispersed
Cam11g1787 Cam-Chr11:30375363 Cam09g0695 Cam-Chr9:6917207 2.60E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52944 PF16135 TDBD 2.40E-16 No_clan Cam TR