Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1796 ATGGGAAAGTTTCCTTTTCTGTTTACTTTCTTGTTGTTTGCTTTGGTAGTTTCTGGAGAGCATGAAACTGAAGGAAACACAAACTCGACGATGAATGATAGTGGAAAGGGCAGAATAGGGCTCATTGTAGACAAGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAAGATTTTAACTCCTTCAGCAATCAAAGTTTTAGTCTTGTCATCAGAGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGAAGCTAATGATCTCATCAGTATGCAACAAGTTCAGGTTCTTATAGGACCACAAACTTGGGAAGCTGCATCCATAGTTGCTGAGGTTGGAAATGAGAAACAGGTTCCAGTTCTAACGTTAGCTAATGAAATACCAAAATGGGCGACCGAGAGGTTCAAATTTTTGGTTCAAGCTTCTCCCTCCCAACTACATCAAATGAGGGCTATAGCTGGTATTATCAGTTCGTGGGATTGGCACCTTGTCAATGTAATATATGAAGATAGAGATTTCTCAACCACCGGAATATTTCCTCATCTTGTACATGCCCTCCAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCTCAATTTGATTTTGATTTATTTTCCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAATATTTGTAGTTCATATGTCTTCCAAGTTGTCACTGTGTCTATTTGAGATAGCAAAAGAGATGGGAATGATGAAAAACGACTATGTTTGGATCACTACTGATTCTTTCACAAACCTTGCACATTCTTTCAATGCTTCTATCAACTCTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAGACAATCCTCAATTTCATGAATTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCACGAGCCTGGTATTTTTGCGATACAGGCTTATGATGCTGCAAGGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGGAATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTCGGTGGAAAGATTCAGTTTAAGGACAGAAAACTAGCCCTATCTGATACTTTTCAGATCATTAATGTGATGGGGAGGAGTTATAGGGATTTAGGCTTCTGGTCGGATAAGTTAGGCTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTGGCGAAGTGTTTTGGCCCGGTGGATCTTTGATAACTCCAAGGGGATGGGTTGTACCAACAGATGCCAATTCATTGAGAATTGGGGTGCCTACTAGTTCCATGTTCAGACAGTATGTACATGTGGAAGAAGATCCTTTGGGAAATAATTTATCCTTCAATGGACTTGCAATTGATCTGTTCAAAGCAACCTTAGACAACCTTAACTTCCCTCTGTCCTACCACTTTTTTCGTTTCGATGGACCATATGATGATTTGGTGAAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCAATATTATCACGGCGCTATGAACATGCGGAGTTTACGCATCCTTACTCAGAAGCAGGACTGGTGATGGTAGTTCCTACCATAAAAGATTCAAGTAATAGAGCATTGATGTTCACAAAGCCCTTTACAGTGACCATGTGGTTTGCAATTGCTGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGCAATCGGTATCCCGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCATTCACCACTCTCTTCTCCTTACATGGTAATATGCTGCACAGTAACTTGTCTAGGATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTCGAACCGACGATAACGAATATCGAAACTCTCCAAAGGGCAAATGCGTTAGTCGGATTTGGCAGAGGATCATTTGTCAAAAGATATTTGGAAGAAGTCTTACACTTTCGTGCCGAAAACATAAGAAACTACTCTACACCTGATGATTATGCCGAAGCTCTCAGAACGCGAGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGTAGGGAATTCATGGTATCTGGACCAACCTACAAAGTTGGAGGATTTGGATTTGCATTTCCGAGAGGCTCTCCGCTGTTAACGGATATTAACGAAGCATTGCTCAAGGTATCTGAAACTGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGGGGATGCAAAGGGTGAAAATTCAAGCCTCAGCCCCAACAGCTTCTTCATATTATTTGTATTGAGTGGAGGAGTATCAACCATAGCTCTTACATTATACATCTTTAATGCTCATAACTTCAGTTTTCAACAGAATACAATTTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAAAGCACAGGAGGCAATTTTCTCGACGAGTAAGTGATGAACCGCAAATGACTGTCTCAAATAACTTCTCGAACGCCACGAACTTGCAAATTCAGGTCTAG 2619 40.63 MGKFPFLFTFLLFALVVSGEHETEGNTNSTMNDSGKGRIGLIVDKSSRIGKEEILAMQMAIEDFNSFSNQSFSLVIRDYKSDPNLAALEANDLISMQQVQVLIGPQTWEAASIVAEVGNEKQVPVLTLANEIPKWATERFKFLVQASPSQLHQMRAIAGIISSWDWHLVNVIYEDRDFSTTGIFPHLVHALQDVGAEVSEFVGLSQFDFDLFSKELERLRRGSSRIFVVHMSSKLSLCLFEIAKEMGMMKNDYVWITTDSFTNLAHSFNASINSLLQGVVGVKSFFPEDNPQFHEFYLRFCQRFRLEHSDEDNHEPGIFAIQAYDAARTAAMAMSEIQEKGNHLLEKIKLTDFQGLGGKIQFKDRKLALSDTFQIINVMGRSYRDLGFWSDKLGFSRELRENSSSSSSMKDLGEVFWPGGSLITPRGWVVPTDANSLRIGVPTSSMFRQYVHVEEDPLGNNLSFNGLAIDLFKATLDNLNFPLSYHFFRFDGPYDDLVKQIYLKNFDAAVGDIAILSRRYEHAEFTHPYSEAGLVMVVPTIKDSSNRALMFTKPFTVTMWFAIAVINVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTITNIETLQRANALVGFGRGSFVKRYLEEVLHFRAENIRNYSTPDDYAEALRTREIAAAFLEVPFVKIFLARFCREFMVSGPTYKVGGFGFAFPRGSPLLTDINEALLKVSETGKFRDLEDSMIANEKCEDGDAKGENSSLSPNSFFILFVLSGGVSTIALTLYIFNAHNFSFQQNTIWRLMIAVMRHWGKHRRQFSRRVSDEPQMTVSNNFSNATNLQIQV 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30493847 30497164 + CaPI482276_11g017960.1 Cam11g1796 140718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1796 872 Gene3D - 155 314 - -
Cam11g1796 872 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 823 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cam11g1796 872 Pfam Receptor family ligand binding region 55 378 IPR001828 -
Cam11g1796 872 FunFam Glutamate receptor 153 314 - -
Cam11g1796 872 Gene3D - 36 154 - -
Cam11g1796 872 Gene3D - 724 781 - -
Cam11g1796 872 Pfam Ligand-gated ion channel 772 804 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam11g1796 872 SMART GluR_14 438 776 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam11g1796 872 FunFam Glutamate receptor 432 547 - -
Cam11g1796 872 Gene3D - 330 436 - -
Cam11g1796 872 CDD GluR_Plant 437 774 - -
Cam11g1796 872 PIRSF IGluLR_plant 1 871 IPR017103 -
Cam11g1796 872 CDD PBP1_GABAb_receptor_plant 38 399 IPR044440 -
Cam11g1796 872 FunFam Glutamate receptor 548 686 - -
Cam11g1796 872 Gene3D - 437 548 - -
Cam11g1796 872 SUPERFAMILY Periplasmic binding protein-like I 38 429 IPR028082 -
Cam11g1796 872 Gene3D - 549 690 - -
Cam11g1796 872 SUPERFAMILY Periplasmic binding protein-like II 415 771 - -
Cam11g1796 872 Pfam Bacterial extracellular solute-binding proteins, family 3 462 556 IPR001638 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1796 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2073 Cam-Chr8:26264639 Cam11g1796 Cam-Chr11:30493847 8.50E-75 dispersed
Cam11g1794 Cam-Chr11:30477113 Cam11g1796 Cam-Chr11:30493847 0.00E+00 dispersed
Cam11g1796 Cam-Chr11:30493847 Cam11g1903 Cam-Chr11:31544418 1.70E-105 dispersed
Cam11g1795 Cam-Chr11:30486526 Cam11g1796 Cam-Chr11:30493847 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .