Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1819 ATGGAAAGCCACTTCATTCGAGCTGGGATGCTCACAAGATGCAGTGTAAGGGAAGCTGTACCACCAACCAGCCCTCCTGATCAAGTATGCAGATTTAATTCAGGTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCCCTACCGCCATTGAGCTGCCGGAGTTGGCAATGGAGGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGCCTTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAGGAAGAGGTTGGCGGAGGAGGCCATGGTGGTAGCAATGCTTGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCCGGCCGTGGAAGGTCCGGTGGGGGCGTCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTTGTCATGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGTCGAAGGCTGGCAGGGCACAACGAACGTCGGCGTAAGAGCTCGGCAGAGTGTCAAGGGGAAAGCACGAGCCGTAAAGGATCAGCCCCGCAGTCGAAAGAAAGCCATTGTAGGCAACTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA 798 50.63 MESHFIRAGMLTRCSVREAVPPTSPPDQVCRFNSGSYIFAPTISTSSINTTTIPTAIELPELAMEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRGAAVSGRGRSGGGVSSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30706657 30708520 - CaPI482276_11g018190.1 Cam11g1819 140741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1819 265 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 240 IPR044817 GO:0003677(InterPro)
Cam11g1819 265 ProSiteProfiles Zinc finger SBP-type profile. 138 215 IPR004333 GO:0003677(InterPro)
Cam11g1819 265 MobiDBLite consensus disorder prediction 221 236 - -
Cam11g1819 265 FunFam Squamosa promoter-binding-like protein 14 132 202 - -
Cam11g1819 265 Gene3D - 131 202 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam11g1819 265 Pfam SBP domain 141 214 IPR004333 GO:0003677(InterPro)
Cam11g1819 265 MobiDBLite consensus disorder prediction 206 265 - -
Cam11g1819 265 SUPERFAMILY SBT domain 139 218 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1819 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g1819 Cam-Chr11:30706657 Cam11g1930 Cam-Chr11:31693150 4.40E-28 dispersed
Cam06g0307 Cam-Chr6:5122061 Cam11g1819 Cam-Chr11:30706657 8.80E-30 transposed
Cam01g2373 Cam-Chr1:35732022 Cam11g1819 Cam-Chr11:30706657 8.60E-31 wgd
Cam11g1819 Cam-Chr11:30706657 Cam03g0628 Cam-Chr3:7120855 4.60E-33 wgd
Cam11g1819 Cam-Chr11:30706657 Cam07g0246 Cam-Chr7:3585139 1.50E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52949 PF03110 SBP 4.10E-31 No_clan Cam TF