Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1829 ATGGTGGGAAATTTGAGAAAAAGCGTTTCTAAGTTTCAGAGGGAGCAGAAGGGGAGCGAGAAAATCATTGGGAATTTTGTTTTGCTTATTTTATACAGACTAAAGCATCGGGTTTCTTTGGTGGAATGGGTTTCTTCGCCGCTGGGGGACGATGGGCTTGTTGCAGAAGTTGAATTCTACTCTTTCATGGCGATGGTTGCTTGTTTTGGGTTTACTTTACTGGTTTCCTCTGTGTCTGTGGCATGCTTGGTTAAGGAAAGAGGGGAAGATGGAGATATTGATATGTTTTTGGGCTTGGGTGTGAGCTTTAAGTGGATAACAATGGAGGGATCATCTGATCACCTTAGGAACCAGGATGATATATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGGAAGATCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCGTGCTTTGTGATGTCTTCTTTCAACCATGTAACTTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTAAATAGTCAAATGGCAGAGGTTAAACCATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTCCGATCTGTTATGACCCCCATAAACGCATTGTCGGAAACTAGTTGCATGCAGTCAAGTTCAGTATATGCTGCCCAAGTATCGTTAAATGAAGGGTCTGGAAAATGTAGAAAAAAAGATAGAAGACATATTGATGAAACAGAAGATAAGATGCAATCATTTCCCATGAAACAGATATTGGCCATGGAGACTACATGGTACACTAGCCCAGAAGAGGCTTCTGATGGCCCAAGTTCAAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGTGATATATTGCAGAGTGAATTTCTCAATGAACCTAAAGATGACCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACTATTTCATTTTTGTGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATTGGGTCACGCACAGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGCCTCCTGTCAGGAATACTGATTCTGCTGGTTTGGGATCAAGGAAACGATTTAGGCCAGGAATTTTGACCCATGATATAGAAGCATGCGGTGATAATCTCGATGACTGTGAGAAGTCGAATCCAGACAATGAAAATCAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTGGCATATTTTTTGATGAGAGGTAGGGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCCGTAGTTTTGACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGACAAGGTGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTTGATCGCGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTGTGGGATGTCACGAGAAGTCAAGTGGTCACTGAAATGGGAGAACACGAGAGGCGCGTATGGTCCATTGACTTCTCATCAGCAGATCCTACAATTTTGGCTAGTGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAGTTTCCTGTGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGATATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTTTCTGCATCCACTGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTGTTGATTCTCCTGTCCAGTCCTTCACGGGCCACATGAATATCAAGAACTTTGTGGGGCTGTCCGTCTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTCATTTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCGAATCATGAAATGGACGACTCCGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2832 41.53 MVGNLRKSVSKFQREQKGSEKIIGNFVLLILYRLKHRVSLVEWVSSPLGDDGLVAEVEFYSFMAMVACFGFTLLVSSVSVACLVKERGEDGDIDMFLGLGVSFKWITMEGSSDHLRNQDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQMAEVKPSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAAQVSLNEGSGKCRKKDRRHIDETEDKMQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSDILQSEFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGSRTDLVKDNHLPLNLPSMPPVRNTDSAGLGSRKRFRPGILTHDIEACGDNLDDCEKSNPDNENQQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSNHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30819583 30828055 - CaPI482276_11g018290.1 Cam11g1829 140751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1829 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 722 759 - -
Cam11g1829 943 Pfam WD domain, G-beta repeat 719 755 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 Pfam WD domain, G-beta repeat 804 839 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 Pfam WD domain, G-beta repeat 634 661 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 Gene3D - 608 943 IPR015943 GO:0005515(InterPro)
Cam11g1829 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 808 841 - -
Cam11g1829 943 Gene3D Transferase(Phosphotransferase) domain 1 141 404 - -
Cam11g1829 943 PANTHER PROTEIN SPA1-RELATED 2 135 943 IPR044630 GO:0009640(InterPro)
Cam11g1829 943 SMART serkin_6 60 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1829 943 SUPERFAMILY WD40 repeat-like 631 940 IPR036322 GO:0005515(InterPro)
Cam11g1829 943 Coils Coil 398 418 - -
Cam11g1829 943 SUPERFAMILY Protein kinase-like (PK-like) 140 405 IPR011009 -
Cam11g1829 943 ProSitePatterns Trp-Asp (WD) repeats signature. 826 840 IPR019775 -
Cam11g1829 943 PRINTS G protein beta WD-40 repeat signature 742 756 IPR020472 -
Cam11g1829 943 PRINTS G protein beta WD-40 repeat signature 826 840 IPR020472 -
Cam11g1829 943 PRINTS G protein beta WD-40 repeat signature 699 713 IPR020472 -
Cam11g1829 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 808 841 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 MobiDBLite consensus disorder prediction 474 496 - -
Cam11g1829 943 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 605 943 - -
Cam11g1829 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 722 764 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 ProSiteProfiles Protein kinase domain profile. 1 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1829 943 SMART WD40_4 801 839 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 SMART WD40_4 627 662 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 SMART WD40_4 758 797 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 SMART WD40_4 902 941 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 SMART WD40_4 848 887 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 SMART WD40_4 715 755 IPR001680 GO:0005515(InterPro)
Cam11g1829 943 SMART WD40_4 673 712 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1829 K26557 - - csv:101205812 1579.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0205 Cam-Chr1:2348075 Cam11g1829 Cam-Chr11:30819583 1.60E-161 dispersed
Cam02g1873 Cam-Chr2:31780632 Cam11g1829 Cam-Chr11:30819583 1.00E-97 dispersed
Cam09g1317 Cam-Chr9:17206298 Cam11g1829 Cam-Chr11:30819583 4.80E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .