Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1830 ATGTCCATCGTTGTCCCTAGCCTCCGGCAAAGAAACCACAATCCTAGGCCGGTGGAGCTTCTGATTGGATTGGCTTTGGAGTCCACTTCTTTTCGAGGTAAGTCCGATTGGTTTTGTATCGAAGCTTCAACGAGTCACCACTGCAATCGGTTTTTGGGAAGGAACACTGGGTTTAAGAGTTGGGTTCTGTTTATGGAAGTTACGGGAGATGAAAGTCGAAGTTGTGGGGTTGGAGGTATAATGACTGGAGGGTCATTGGGTCTTCGTACGGGAAGCTATGCATCACTGCATCAACAGCTACAAAATGGTGCTTTGCAAAATTCAGGAGCGTCACTGCTTGTGCACAAGCCTTCGAAAACAAATCTTTCAAGTTCAAGAGAGAGGGAGAGAGTTATGCCCTTGTTTTGTCGATACTTTGGTCGGAGAAGGGTTGCGATGCTCCTCTTGTTTATTCTTGCACTTTTGGTTTTTGTATTTGGATCCTTTGCAGTCAGTAGAGATAGCAGCGATTTAAAGCCACCTTATGAAGAAACTACACTAAGAGATTTGATAAATCCTGCCGTTCCAAGAACAGAAAACTTCAAGGACATTATAACTTCTACACATGGGAATTTGATTGGAAGAACTGAAAATTTATCTCTGTTTCCTCCTTTCCCTCATTCAAATCGTTCTTTAATCTCTAATTTTTTTCCTCGACATTCCCTTTCATCGCCACATCCATGCAAAAACTTTGCGCTACCTCCTCCAGCTCCAGCTAACGGAAAGCGGACTGGAGCACGTCCCTGTCCAGTATGTTATATCCCTGTGGAGCAGGCTATTGCTAGTATGCCAATTGCACCATCAATATCTCCTGTACTACGCAGTTTAACATATATTCATGACGAAAATCCAACAAAAACAGAACCACATGGGGGGTCTGATTTTGGTGGATATCCTTCTTTAAGACAGAGAAATGATTCTTTTAATATAAAAGAGTCGATGACAGTTCACTGTGGATTTGTTAAAGGAAGTAAACCTGGTAATCAGAGTGGTTTCGATATTGATGAAGCCGACCTTCTGGAGTTGGAGGAGTTTCATGAGGTCATTGTTGCATCAGCCATATTTGGAAACTACGATGTATTACAGCAGCCTATTAATATTAGTGAAGAATCAAAAAGATTTGTTCCTTTCTACATGTTCATTGATGAAGAAACAGAAGCATATATGAAGAACTCTAGCCTCTTAGATAGCAGAAAGAGGATTGGCTTGTGGAGAATCATTGTAGTTCGTAATGTTCCTTATGCTGATTCAAGACGTAATGGCAAGATTCCAAAGCTTCTTCTGCATAGGCTTTTCCCGAACATTCAATACTCTATATGGATAGATGGAAAACTTCAGCTTGTTGTGGATCCATTTCAAATTCTTGAGAGGTTCTTGTGGCGTCAAAATGCAACATTTGCAATTTCAAGACACTATAAACGATTTGACGTCTTTGAAGAGGCTGATGCTAATAAAGCTGCAGGAAAATATGACAATTCCTCCATTGATGAACAGATTGATTTTTATGTTAGCGAGGGTTTAACACCATATTCTTTGGCTAAGCTTCCTATAACTAGTGATGTTCCTGAAGGATGCGTTCTAATTCGAGAACATGTTCCTATAACAAATTTATTCACTTGCCTTTGGTTCAATGAAGTTGATCGTTTTACTTCAAGAGACCAGTTAAGCTTCTCGATGGTGAGAGATAAGATAATGTCTAAAGTCAATTGGAGCATTAACATGTTCTTGGACTGTGAAAGGCGCAATTTTGTTATACAGACGTATCATAGAGAACTACTGGAACACATGCCACCTCCTGCCAGAGCAGTCATCCGTCGTCCTCCACCGGTGCCTGATGGTCATACTGTTCCTAAGCCTCCAGTTCATGTTGTTCAGAAGGCTCCACCAGTGAAGAGAAATCCTTCCAAGCGAGGAAGAAGCGATAAGAGATTTTGCAAAACATCTCTGGCTTTTGATAAGGGCTGGGCATTCGCTGGATTTGGGAAGATCTCTTCAAAGCCATATTCAGCCAAGAAACGTGAAATATCATCTGCTTCCACTTCTGGGTTTATAAAACCCCACTCGCCGATGATCAAACGGGCTTCCAAAATGCTAAAAAACAAAGAGACAATCTCACTTGATGTGATTGATGTTGACGAAGATGAAGCTTCCGATAGTGCCATGTATATTCACCACAAGTTTGACGCAAATGACAAAGGAAAGGGTATATATCACCATAGTGATCATCAGTTGAAGAAAACATTGGGTAGCCATTCATTTAATCCAGATGTGGAAATCCTAGAGAGTACAAATGAAGTTGAATCTAATTTTCCCTCAGCATCACATAATTTGATTGACCTAGACAATCCTTGCTCTTATTCATCAAATGAAGATGACGACTGGATAGGATTTGATGAAATCATGGATGTGGATGCATATTCAGCTTTGCAAGCCCATTTTGATCATATGGATATTCCTCCTGATATTGAAGCACCGATACCTTGGCTGCCTCAGGATCAAAATGGAAACAAGACCAACATTGAAACTAGCAGAACCTCATGGTCATCATTTGCAGAACCTCAAAGCGTATCAGGTTCTGTTAATCATCTAGGAACATCAACTGGTCAAGTTCAGCTGAATGAAGCTTTATCAAATAGCCTACACTTGCCGGCTGACGTTGGTGTTCTGAATCATCTTGATCATTTTGCTTCGTTTCCTTCACACGATGTTCAACCTAATAAGAAACCAGCTGCATCCCGCTACAGGGACAAATCCGAGGTTAGTCACTTAAATTCTTTACTTGGTATTGATGCAGCTAAATCCCGGTGGTTTTTGGACCCATTTAAGCGTAAAAAGAAGCTACATGGTTCAAATAACATTTCTATTAACCCGTTGGATGCAATGAAGCTCCATAATGGAGGTGAGACATCTGATACATCCGACAGTGTAAAGAAGCAAGTCAGTTCACATAATATGTCCCAGCCAAACTTCCAAACATATGTGGACTTCTTTGATCCGGAAGCAGGACAATCTATGCCATATTGGCCTGAATATGCGAAAATGAAAAACAAGGAGCCATTTTTCCCCCCTCATATGGCTTCAGGTCTTTATGGGCCATTTAATACTCTTGTTCCTCCTACTCTTGGAGAAGTTGTAGATATGCCATGGGTTCAGGGTTCCACCCAAAATCTTCCAAATTTTGCTCAAGGTGACTCGATAAGCGTAACAATTTCACCTGCAGACATGGATAAATTCTTGCAGAACTTTGAGCAATTTAAACAATTTGATACTGTTGACGATCATTCTGACCATCACTATACTAGCAAAGGTTCTAGCATGAACCAGGGGTCAAAGAAATGGACAAAGAAAATTCAGGACGACTGGAAGATCCTGCAAAATGATTTACCTGAAACTATATTTGTTAGGGTATATGAGTCAAGAATGGATCTTATGCGGGCTGTCATCATTGGAGCACAGGGTACTCCATATCATGATGGACTATTTTTCTTTGACATATTTTTCCCTAATCGTTATCCGGACATACCGCCACAAGTTTATTATCACTCTAAGGGCCTTCGACTTAACCCGAACTTGTATAATTGTGGGAAAGTATGTCTAAGTCTGCTTAACACCTGGCGTGGCAATGGAAATGAGAATTGGGTTCCTGCCATGTCAACTATGCTTCAGGTTCTTGTCTCTATCCAAGGGTTGATCCTGAATACAAAGCCCTACTTTAACGAGCCCGGGTATGCATATCAAAGTGGATCAGAGGCGGGTGAGAATAGGTCTCAACTGTATAATGAGGAGACGTACATCCTATCTATTAGGACCATGTTGTTTATCATCAGGAGGCCACCAAAGCATTTTGAGGACTTTGTTAGGGGACATTTCTACAAAAGGGCTCATGATATTCTGGTGGCATGCAAAGCATATATAAATGGTGCTCAGGTGGGATCTCTAGTTGAAGGCGGGGTTCAAGATCTGGAGCTGAGCGACAAGAGCTGCTCAGACAATTTTAAGCAATCCGTGACCCATCTTTTAAGTCAGCTTGTTGAGGCTTTTAAGGGAATTGGAGTCAGTGACTGCGATAAGTACCTGCAACCGCTACCACCGCCCGTATCAAATGCAAGGAAGCGATCAGGTAGGCACAGTAAAGCTCAGTTAGAATAG 4188 41.4 MSIVVPSLRQRNHNPRPVELLIGLALESTSFRGKSDWFCIEASTSHHCNRFLGRNTGFKSWVLFMEVTGDESRSCGVGGIMTGGSLGLRTGSYASLHQQLQNGALQNSGASLLVHKPSKTNLSSSRERERVMPLFCRYFGRRRVAMLLLFILALLVFVFGSFAVSRDSSDLKPPYEETTLRDLINPAVPRTENFKDIITSTHGNLIGRTENLSLFPPFPHSNRSLISNFFPRHSLSSPHPCKNFALPPPAPANGKRTGARPCPVCYIPVEQAIASMPIAPSISPVLRSLTYIHDENPTKTEPHGGSDFGGYPSLRQRNDSFNIKESMTVHCGFVKGSKPGNQSGFDIDEADLLELEEFHEVIVASAIFGNYDVLQQPINISEESKRFVPFYMFIDEETEAYMKNSSLLDSRKRIGLWRIIVVRNVPYADSRRNGKIPKLLLHRLFPNIQYSIWIDGKLQLVVDPFQILERFLWRQNATFAISRHYKRFDVFEEADANKAAGKYDNSSIDEQIDFYVSEGLTPYSLAKLPITSDVPEGCVLIREHVPITNLFTCLWFNEVDRFTSRDQLSFSMVRDKIMSKVNWSINMFLDCERRNFVIQTYHRELLEHMPPPARAVIRRPPPVPDGHTVPKPPVHVVQKAPPVKRNPSKRGRSDKRFCKTSLAFDKGWAFAGFGKISSKPYSAKKREISSASTSGFIKPHSPMIKRASKMLKNKETISLDVIDVDEDEASDSAMYIHHKFDANDKGKGIYHHSDHQLKKTLGSHSFNPDVEILESTNEVESNFPSASHNLIDLDNPCSYSSNEDDDWIGFDEIMDVDAYSALQAHFDHMDIPPDIEAPIPWLPQDQNGNKTNIETSRTSWSSFAEPQSVSGSVNHLGTSTGQVQLNEALSNSLHLPADVGVLNHLDHFASFPSHDVQPNKKPAASRYRDKSEVSHLNSLLGIDAAKSRWFLDPFKRKKKLHGSNNISINPLDAMKLHNGGETSDTSDSVKKQVSSHNMSQPNFQTYVDFFDPEAGQSMPYWPEYAKMKNKEPFFPPHMASGLYGPFNTLVPPTLGEVVDMPWVQGSTQNLPNFAQGDSISVTISPADMDKFLQNFEQFKQFDTVDDHSDHHYTSKGSSMNQGSKKWTKKIQDDWKILQNDLPETIFVRVYESRMDLMRAVIIGAQGTPYHDGLFFFDIFFPNRYPDIPPQVYYHSKGLRLNPNLYNCGKVCLSLLNTWRGNGNENWVPAMSTMLQVLVSIQGLILNTKPYFNEPGYAYQSGSEAGENRSQLYNEETYILSIRTMLFIIRRPPKHFEDFVRGHFYKRAHDILVACKAYINGAQVGSLVEGGVQDLELSDKSCSDNFKQSVTHLLSQLVEAFKGIGVSDCDKYLQPLPPPVSNARKRSGRHSKAQLE 1395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30834955 30854187 + CaPI482276_11g018300.1 Cam11g1830 140752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1830 1395 FunFam Probable ubiquitin-conjugating enzyme E2 23 1088 1364 - -
Cam11g1830 1395 SUPERFAMILY UBC-like 1110 1294 IPR016135 -
Cam11g1830 1395 Gene3D Ubiquitin Conjugating Enzyme 1088 1365 IPR016135 -
Cam11g1830 1395 MobiDBLite consensus disorder prediction 1376 1395 - -
Cam11g1830 1395 CDD UBCc 1127 1274 IPR000608 -
Cam11g1830 1395 MobiDBLite consensus disorder prediction 624 653 - -
Cam11g1830 1395 Pfam Ubiquitin-conjugating enzyme 1130 1249 IPR000608 -
Cam11g1830 1395 PANTHER ALKALINE CERAMIDASE-RELATED 120 623 IPR006852 -
Cam11g1830 1395 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1125 1285 IPR000608 -
Cam11g1830 1395 SMART ubc_7 1128 1285 - -
Cam11g1830 1395 Pfam TOD1/MUCI70, glycosyltransferase-like domain 289 602 IPR048354 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2516 Cam-Chr1:36766289 Cam11g1830 Cam-Chr11:30834955 3.60E-49 dispersed
Cam02g1257 Cam-Chr2:24779581 Cam11g1830 Cam-Chr11:30834955 8.00E-85 dispersed
Cam08g0073 Cam-Chr8:1336491 Cam11g1830 Cam-Chr11:30834955 2.00E-69 dispersed
Cam11g0816 Cam-Chr11:10408630 Cam11g1830 Cam-Chr11:30834955 2.90E-69 dispersed
Cam05g2119 Cam-Chr5:29653015 Cam11g1830 Cam-Chr11:30834955 3.10E-54 transposed
Cam06g0446 Cam-Chr6:6611815 Cam11g1830 Cam-Chr11:30834955 2.10E-69 transposed
Cam01g2361 Cam-Chr1:35648979 Cam11g1830 Cam-Chr11:30834955 6.60E-87 wgd
Cam11g1830 Cam-Chr11:30834955 Cam03g0612 Cam-Chr3:6942094 3.60E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g227 . . . . . . . Bma13g00958 . . Cma01g01207 Cma09g00867 Car01g01032 Car09g00780 Sed05g2568 Cpe06g00690 Cpe02g00703 Bhi09g03415 Tan01g4399 Cmetu07g0826 . . Mch11g1071 . Cla11g01764 Cam11g1830 Cec11g1851 Cco11g1858 Clacu11g1991 Cmu11g1800 Cre11g2207 Cone6ag0142 . Cone14ag1066 Cone15ag1055 . Csa04g02346 Chy07g00079 . . . . . . Bpe01g00429 . . . Cmo01g01260 Cmo09g00856 . . . . . . . . . . . . . . . . . . . . . . . .