Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1835 ATGGAACAAAACTACACTGTACCTGAGGCATACTTAGAGTCTGAACAAGATGTCTCTCTCAAGCAAAACTGGAAATCTATCTCAACTCAGTCAACAGTCTCGGAAGAGGTGAGCGGTTGCTTTGATTGCAACATTTGCTTAGACTCAGCAGCTGACCCTGTTGTCACCCTCTGTGGTCACCTCTTTTGCTGGCCGTGCATTTACAAATGGCTTCATGTTCAAATCTCCAGCAATGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATTACTCCCTCCTCTTTGGTTCCCCTCTATGGCCGTGGCACATCATCGAACTCAGATTCTGAATCCAAAAAGTCTCACTTGGGTATTGCTGTACCTCGAAGACCACCGCCATCAATGAACACACCGCCCCATTCCATTGCAACCTCTTCATTGCATCCTAGCCAGGAGCTTCATCCAAATTATATCCGCTCGCCCTCACACCCAATCTATCACCAACAATATTTCCCCCAAGCCTACGGTGACTTTGCCTCATATGCACCGTCTTATCTCGGTAATGCCGTGATAACAAGCCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTTACTAGAATTTTTGGTAGCGTGGATGGGAACTTATTGCCATACCCACCATACAACAACTCGATCCCAGGACATGCCAATACCAGAATGAGAAGACAGGAAATGCAGCTTGATAAAAATCAACTTCTTTCATTGGAGTCGGGTGGTGAGAAGGTTGATAGCCATTGCATGCTCAGCTTTACTTTGTTTCTTGCACTTGATTCTCTCTCTGTTTCTGCTTGGAAGGGGAAATCAGGGTGTGTGAAGATGAGGGGTCCTTTAGGGGCAGTGATTGGGAGGTACCCTTCAAGTGATGGAAATGCCCAAATGGGTGGAATCATTAGGCATAATAGAAAATGTAGAGATATTGTATTTCTTGTGATCTTTATAGCTTTCTGGGTGGGGATGATTGTTAACTCAAGCTTTGGATTTAACCAAGGAAACCCATTAAGGCTTACATATGGACTAGACTACAAAGGAAATGTCTGTGGTGACAAGCATGCTAATCCTGGCCTTCGTGAATTGGAGCTTAAATATTGGTTGAATCCTAATCAGGTTTATCAAAGTGGTCTGAAGGACAGTCAATTTAAGTTGGCGGATGCCCGGAGTATATGCTTGATGGATTGCCCGACTCCTTCAGAAGATTCTCTAAACTGGGTTTGCGATTATCCAGAAGGTGAAATACGCCTCTCAATGGATGATTGGATAGACAGGAACTACGATTACTTTGAGTTCCTTACGCCTGAGATGAGAAACAGTTCTGTTAACCTTCAGGGTCCTTGCTACCCTGTCATTTTTCCTAGTGTAAATGTTTATTGGAGCTGCCAGTTCCTTGCCCGCCCCTCAAATGTATCATTAACACATTGGAAGCAGATGGGTGGAATGAACATTGATGCAGATTTGATCATTGATAAATCTATTCATAAGTCAACCAACTCTCGATCATCTGTCTTAAAGAGATACATGGCGGATATTGGGAAGTCATGGCCGGTATTGATTGTTTGCGGAGGAATTTTACCTCTATTTTTGGCAGTGATTTGGTTGCTAATGATTCGGCATTTTGTTGCTGCGATGCCGTGGGTAACAGTTGTCCTATTCAACATTCTCATCGTATCGGTCACAATGTTTTATTACCTCAAAGCTGGATGGATAGGAAACGATGCTATAACTCCCATCATTGGTGATCATGATCCCTATGTCCACATATTTGGAAGGGAGCTCAATCATATGCGTGCTGCTGCTGTTCTAATGACTTTTGTTATGGCTGTCTCCGTTCTTACATCAATTGCCATCATCCGCCGAATCATAATGGCAACATCTGTTGCTGCAAAGGTGATTGGAGAAGTTCAAGCACTCATAATCTTTCCAGTCATACCTTATGCCATCCTTGCAATTTTTTATATGTTATGGTTATCAGCTGCGCTTCATCTCTTCAGCTCTGGTCAGGTTGTCCAGAATAATTGCAACTCAAACTGCTGTGCCTACGATCTTGCTTCAAAACGAGTGAACTGCGACCGTTGCTGTGGTTATAGCATCCGTTATACTCCTCATATCGACATTGCCATCTTTTTCCACCTATTTGGTTGTTATTGGGCTACTCAATTTTTTGTAGCATGCTCTTCAACAGTTATTGCAGGTTCAGTAGCCTCCTATTATTGGGCTCGTGGTGAAACTTCGCCCGAAATTCCATTTCTTCCTGTTTTCTCCTCAATGAAACGGTTAGCAAGATATAATCTCGGGTCCATGGCTCTCGGTTCCTTGACTGTGTCCTTCATGGAATCAATTCGTTTCATACTTGAATCTATTCGTCGCAAATTGAAAGTTGCGAGTACAGCACCAGATAGTCGGATTGGCCGAGCAGTGCATAATACGTCTCGGTTTTGCCTGAGATGTATAGAGTGGATCATCAAATCTGTTAACCGCAATGCATACATAATGATTGCGATAACGGGCAAGAGCTTTTGCAAGGCGTCTGCTATTGCGACAGAGTTAATAATTAACAACATCCTTCGAATCGGAAGAGTGAATGTGATTGGAGATGTCATTCTGTTCCTTGGGAAACTGTGTGTCAGCCTCTCAAGTGCTCTTTTTGCTTTCCTCATGTTGGATACCCACAAATACAGATCTGCTCATAACAAGATTTCTTCCCCATTGTTTCCAGTCCTGGTTTGCTGGGGGCTAGGCTATGTGGTTGCCACACTTTTCTTTGGAGTGGTGGAGATGTCCATTGATACAATAATTCTTTCCTTCTGTCAAGATTCTGAAGAACATCAAGGCACAGCTCAGTATGCCCCTCCTCTTCTCATGGAGACTCTCAATGATCAAAATGAGATGCAAAGACTTACACAAGGACCTCCCAGTTCATAA 2952 43.53 MEQNYTVPEAYLESEQDVSLKQNWKSISTQSTVSEEVSGCFDCNICLDSAADPVVTLCGHLFCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSSNSDSESKKSHLGIAVPRRPPPSMNTPPHSIATSSLHPSQELHPNYIRSPSHPIYHQQYFPQAYGDFASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSIPGHANTRMRRQEMQLDKNQLLSLESGGEKVDSHCMLSFTLFLALDSLSVSAWKGKSGCVKMRGPLGAVIGRYPSSDGNAQMGGIIRHNRKCRDIVFLVIFIAFWVGMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHANPGLRELELKYWLNPNQVYQSGLKDSQFKLADARSICLMDCPTPSEDSLNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSVNLQGPCYPVIFPSVNVYWSCQFLARPSNVSLTHWKQMGGMNIDADLIIDKSIHKSTNSRSSVLKRYMADIGKSWPVLIVCGGILPLFLAVIWLLMIRHFVAAMPWVTVVLFNILIVSVTMFYYLKAGWIGNDAITPIIGDHDPYVHIFGRELNHMRAAAVLMTFVMAVSVLTSIAIIRRIIMATSVAAKVIGEVQALIIFPVIPYAILAIFYMLWLSAALHLFSSGQVVQNNCNSNCCAYDLASKRVNCDRCCGYSIRYTPHIDIAIFFHLFGCYWATQFFVACSSTVIAGSVASYYWARGETSPEIPFLPVFSSMKRLARYNLGSMALGSLTVSFMESIRFILESIRRKLKVASTAPDSRIGRAVHNTSRFCLRCIEWIIKSVNRNAYIMIAITGKSFCKASAIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSALFAFLMLDTHKYRSAHNKISSPLFPVLVCWGLGYVVATLFFGVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLMETLNDQNEMQRLTQGPPSS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30886924 30898322 + CaPI482276_11g018350.1 Cam11g1835 140757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1835 983 ProSiteProfiles Zinc finger RING-type profile. 43 90 IPR001841 -
Cam11g1835 983 CDD RING-HC_AtRMA-like 41 91 - -
Cam11g1835 983 Pfam Zinc finger, C3HC4 type (RING finger) 43 89 IPR018957 GO:0046872(InterPro)
Cam11g1835 983 SMART ring_2 43 89 IPR001841 -
Cam11g1835 983 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Cam11g1835 983 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 305 972 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cam11g1835 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 104 IPR013083 -
Cam11g1835 983 Pfam Plasma-membrane choline transporter 611 950 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cam11g1835 983 SUPERFAMILY RING/U-box 23 96 - -
Cam11g1835 983 MobiDBLite consensus disorder prediction 104 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1835 K15377 - - csv:101206929 1380.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0292 Cam-Chr7:3980969 Cam11g1835 Cam-Chr11:30886924 1.20E-36 dispersed
Cam08g2009 Cam-Chr8:25826885 Cam11g1835 Cam-Chr11:30886924 1.00E-25 dispersed
Cam10g1724 Cam-Chr10:31274480 Cam11g1835 Cam-Chr11:30886924 1.70E-21 dispersed
Cam05g1409 Cam-Chr5:16497431 Cam11g1835 Cam-Chr11:30886924 4.10E-07 transposed
Cam01g2359 Cam-Chr1:35626985 Cam11g1835 Cam-Chr11:30886924 4.40E-43 wgd
Cam11g1835 Cam-Chr11:30886924 Cam03g0606 Cam-Chr3:6898496 1.80E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g245 . Blo03g01543 . Bda09g00501 . Bpe08g01028 . . . . Cma01g01205 . Car01g01029 Car09g00786 Sed04g3115 Cpe06g00696 Cpe02g00706 Bhi09g03404 Tan01g4406 Cmetu07g1213 . Hepe01g1378 Mch11g1078 . Cla11g01770 Cam11g1835 Cec11g1856 Cco11g1864 Clacu11g1996 Cmu11g1805 Cre11g2214 Cone6ag0138 Cone9ag0163 . . Lsi04g01327 Csa04g02352 . . . . . . . . . . . Cmo01g01257 Cmo09g00862 . . . . . . . . . . . . . . . . . . . . . . . .