Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1838 ATGTACTCAAATTTCCTAAGATCCCCTTCAAATCTCACTGACCTTTCTACTTCACCTCCAAAAGCAGATGCAAAAGAGACAAATCCAACTCAACGTGACAGCCGATTCCAAAAAGAAACGATATATATAAATCAACAGCCAAAAGGGCCTCGGACTTGGTTCTTGCTTCCTCGTTGCTGCAAGCATAAATTTGATGTTGCCACTGTGCTCAATCCCCATCCGCATGGCTCACTCCGCGTTTTGCCTCCAAATAAGGTTTTAAATGTTCATGTCATGGAAATGTGGAGATCTCATCTCAATTTTGTAGAAATGTCAAGGAAAATATTGGGGCAACGCAATTCCTACTCTCCAGAAATCGAGGAGGATTTTGCACTTTCTTCTAAAAGTCAGAGCGCAAGCATCTCAATCCACAGCGTCTCTGTCATTAGCTGGGAATCAGTTTTAACTGTATTTCAGGGGGATTTATATTTGAGATTTCATTCAAGCTTGGAAAGTGAAGTTCTAACGTCCGGTCGGCTGAACACTCGTGATCTTGTTTGCTTGGAGTTGACTTGCAAGTTGTTTGGAGGGAGCCACGAGCTGTACCCTCTCAAGTTTCGGTCATTAGTTGATTTTGCAGCATTTCAATTATGTATATCACACAGCATTTATTCTGGAATGGGAGAGGATTCCCGAAAACAACTCTTTGATCGCTGTCGAGGGAAGTGGAAACGAGTTTTTCAGTTCTTGCAATTGGTGGAAAAATCTTCCACCGTCGTTGAGACCTCAGAAGGCAATATGCAGATTGCAACTGGAAGATATCATACATTACTGATCAGCAATGCATCAGTATACTCTTGTGGTTCCAGCTTATGTGGTGTTCTTGGTCATGGCTCTGAGACCACGCAATGTGTAACATTTACCCGAATTAATTTTCCACCTTCTATATACATTCAGCAAGTTTCTGCTTCTCACAATCATGCTGCTTTTGTCACACAGTCAGGACAGGTTTTCACCTGTGGAGATAATTCATCATTTTGTTGTGGGCACAGAGATACAAGCTGTCAAATCTTTAGACCTAGAATTGTTGAAGCATTAAATGGAATTCCTTGCAAGCAGGTCTCTGTGGGGCATAACTTTTCAGTATTTTTAACAAGACAAGGCCACGTCTATACATGTGGAACAAACACATATGGTCAGCTTGGCCACGGTGATACTCTAGAGGGACCTACACCGAAGATTGTTCAACGGCTTGTGGAAATTGGATCTGTAATTCAGATTGCTGCTGGTCCAAGTTATGTACTGGCCGTAGTTAATGATGGGAGAGTATTCTCTTTTGGGTCAGGTTCTAATTTCTGCCTTGGCCATGGAGAGCAGCACAATGAATTCCAGCCTCGTGTCCTACAGACATTTAGATTGAAAGATATTCATGTTGTTTCTGTATCTGCTGGTGACGAGCATGCGGTGGCATTAGATTCAAACGGATTTGTATATACTTGGGGAAAAGGCTACTGTGGTGCCCTGGGCCATGGAGATGAGATTGATAAGACTATCCCTCAACCCTTGAACAGCCTTAAGAACCACCTTGCAGTGCAGGTATGTGCAAGAAAGAGGAAAACTTTTGTGTTGCTGGACACTGGTGTTGTTTATGGTTTTGGGTGGATGGGGTTTGGTAGCCTTGGATTTCCAGACAGAGGAGTATCCGACAAAGTCTTGAGACCTCGATGCCTCAACAGCTTAAGGGTTCACCGTGTTTCTCAAATCAGCACCGGGCTGTATCACACTGTCATGGTTACTGAGAAAGGAAAAATATTCGGCTTTGGAGATAATGAAAGAGCACAACTGGGGCATGAATCTCTCAGAGGCTGCCTTGAACCCACTGAGATCTTTATCCAGGATTCAGAATCTGGGTAG 1893 43.26 MYSNFLRSPSNLTDLSTSPPKADAKETNPTQRDSRFQKETIYINQQPKGPRTWFLLPRCCKHKFDVATVLNPHPHGSLRVLPPNKVLNVHVMEMWRSHLNFVEMSRKILGQRNSYSPEIEEDFALSSKSQSASISIHSVSVISWESVLTVFQGDLYLRFHSSLESEVLTSGRLNTRDLVCLELTCKLFGGSHELYPLKFRSLVDFAAFQLCISHSIYSGMGEDSRKQLFDRCRGKWKRVFQFLQLVEKSSTVVETSEGNMQIATGRYHTLLISNASVYSCGSSLCGVLGHGSETTQCVTFTRINFPPSIYIQQVSASHNHAAFVTQSGQVFTCGDNSSFCCGHRDTSCQIFRPRIVEALNGIPCKQVSVGHNFSVFLTRQGHVYTCGTNTYGQLGHGDTLEGPTPKIVQRLVEIGSVIQIAAGPSYVLAVVNDGRVFSFGSGSNFCLGHGEQHNEFQPRVLQTFRLKDIHVVSVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIDKTIPQPLNSLKNHLAVQVCARKRKTFVLLDTGVVYGFGWMGFGSLGFPDRGVSDKVLRPRCLNSLRVHRVSQISTGLYHTVMVTEKGKIFGFGDNERAQLGHESLRGCLEPTEIFIQDSESG 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30907797 30918121 + CaPI482276_11g018380.1 Cam11g1838 140760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1838 630 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 433 IPR000408 -
Cam11g1838 630 SUPERFAMILY RCC1/BLIP-II 251 557 IPR009091 -
Cam11g1838 630 MobiDBLite consensus disorder prediction 1 38 - -
Cam11g1838 630 Gene3D - 246 414 IPR009091 -
Cam11g1838 630 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 487 IPR000408 -
Cam11g1838 630 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 595 630 IPR000408 -
Cam11g1838 630 Pfam Regulator of chromosome condensation (RCC1) repeat 578 607 - -
Cam11g1838 630 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 594 IPR000408 -
Cam11g1838 630 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 138 468 IPR051210 -
Cam11g1838 630 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 581 591 IPR000408 -
Cam11g1838 630 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Cam11g1838 630 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 380 IPR000408 -
Cam11g1838 630 PRINTS Chromosome condensation regulator RCC1 signature 435 451 IPR000408 -
Cam11g1838 630 PRINTS Chromosome condensation regulator RCC1 signature 490 506 IPR000408 -
Cam11g1838 630 PRINTS Chromosome condensation regulator RCC1 signature 581 597 IPR000408 -
Cam11g1838 630 PRINTS Chromosome condensation regulator RCC1 signature 597 611 IPR000408 -
Cam11g1838 630 PRINTS Chromosome condensation regulator RCC1 signature 471 484 IPR000408 -
Cam11g1838 630 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Cam11g1838 630 MobiDBLite consensus disorder prediction 1 25 - -
Cam11g1838 630 Pfam Regulator of chromosome condensation (RCC1) repeat 487 528 IPR000408 -
Cam11g1838 630 Pfam Regulator of chromosome condensation (RCC1) repeat 380 430 IPR000408 -
Cam11g1838 630 Pfam Regulator of chromosome condensation (RCC1) repeat 433 484 IPR000408 -
Cam11g1838 630 Pfam Regulator of chromosome condensation (RCC1) repeat 327 377 IPR000408 -
Cam11g1838 630 Gene3D - 415 628 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1838 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2029 Cam-Chr5:28994277 Cam11g1838 Cam-Chr11:30907797 2.40E-19 dispersed
Cam05g2811 Cam-Chr5:35227500 Cam11g1838 Cam-Chr11:30907797 6.30E-53 dispersed
Cam11g1725 Cam-Chr11:29875201 Cam11g1838 Cam-Chr11:30907797 2.70E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g253 . Blo03g01540 . Bda09g00499 . . . . . . Cma01g01201 Cma09g00877 Car01g01026 Car09g00789 Sed04g3120 Cpe06g00700 Cpe02g00708 Bhi09g03400 Tan01g4411 Cmetu07g0621 . Hepe01g1375 Mch11g1083 . Cla11g01774 Cam11g1838 Cec11g1859 Cco11g1869 Clacu11g2000 Cmu11g1809 Cre11g2217 . . . . Lsi04g01323 Csa04g02357 Chy07g00086 . . . . . . . Bma07g01184 . . Cmo01g01255 Cmo09g00866 . . . . . . . . . . . . . . . . . . . . . . . .