Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1859 ATGCCATTCAACCGGAAAGCCGATGCATCATCCTGTTCGAAAAGCCTCGACGTTTTCAATCGTTATAACAATGAACAGCAGCTCCTGATTTTGTTGGGTTTTGCTAGAATCACGGTTTTAACATCTGGGTTTTGTGTAAAACTTGTGGGAATCGCCAATGGAGGACGGAGAGTACTCGAAGGAATTGGATATGGCGTTAAGGCCAAGGATGATGATTCTCCGGTGACAATTGCCGATTGGAGTGTACAAGCAACTGTTAGCTGGATCCTTTCTAAATACTTCGGAAGCAAAAACGTATCCATTGTTGCTGAAGAGGATGTACAAACTCTCTCTACACCGGATTCAAGAAGTCTGTTGTCAGCTGTGGTAAAAACTGTAAATGAATGCTTAACTGAAGCACCAAAATACGGTCTTCAAAGTCCAGCCGGAGAACTTGGAACTTGTGAAATTCTCGAGGCTATAAGCCGGTGCAATTCAACTGGTGGCCCCACAGGTAGACATTGGGTGCTTGACCCTGTTGATGGAACGTTAGGTTTTGTCCGTGGGGATCAATATGCTGTTGCTTTGGCCTTGATTGAAAATGGTAAAGTAGTTCTTGGAGTTCTTGGTTGTCCCAATTATCCATTGAAGAAGGAATGTCTTCATTATCACTATAAGGTATCGGCGCCAAAGTTATCACAACCATGTTCTGATACCTTGGAAAAAGGTTGTGTCATATATGCAAAGAGAAGCTGCAGTGGGGCGTGGATGCAGCCATTAGTCCATGGCGATAAGAAGCTTGAGTGGCCAAATTCGGCTAGCCTTATTCAGGTTTCTTCAATTGATGATCCAGCACTTGCAACTTTCTGTGAACCTGTGGAGAAGCGGAACTCAAACCACTCGTTCACCGCAGGGCTGGCTTACAGTGTAGGGCTTAGGAAGCAGCCGTTGCGAGTCTATAGTATGGTAAAGTATGCTGCCATTGCCCGTGGCGATGCTGAGATTTTTATGAAGTTTGCAAGGACTGGATACCGAGAGAAGATATGGGACCATGCTGCTGGTGTTATCATTGTAGAAGCTGCTGGAGGGGTGGTAACGGATGCCGGAGGTCGTCCCTTGGATTTCTCAAAGGGGGTGTACTTAGAAGGTCTCGATCGAGGAATAATTGTTTGTTCAGGGCCAATCTTACATGAGAAAATCATTGGAGCAGTCTATGCCAGTTGGGATTCTTCCAATCTATAA 1221 45.21 MPFNRKADASSCSKSLDVFNRYNNEQQLLILLGFARITVLTSGFCVKLVGIANGGRRVLEGIGYGVKAKDDDSPVTIADWSVQATVSWILSKYFGSKNVSIVAEEDVQTLSTPDSRSLLSAVVKTVNECLTEAPKYGLQSPAGELGTCEILEAISRCNSTGGPTGRHWVLDPVDGTLGFVRGDQYAVALALIENGKVVLGVLGCPNYPLKKECLHYHYKVSAPKLSQPCSDTLEKGCVIYAKRSCSGAWMQPLVHGDKKLEWPNSASLIQVSSIDDPALATFCEPVEKRNSNHSFTAGLAYSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGVVTDAGGRPLDFSKGVYLEGLDRGIIVCSGPILHEKIIGAVYASWDSSNL 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31159972 31163226 - CaPI482276_11g018590.1 Cam11g1859 140781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1859 406 ProSitePatterns Inositol monophosphatase family signature 2. 342 356 IPR020550 GO:0046854(InterPro)
Cam11g1859 406 ProSitePatterns Inositol monophosphatase family signature 1. 168 181 IPR020583 -
Cam11g1859 406 Pfam Inositol monophosphatase family 72 399 IPR000760 -
Cam11g1859 406 PANTHER PHOSPHATASE 65 402 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Cam11g1859 406 FunFam PAP-specific phosphatase HAL2-like 270 403 - -
Cam11g1859 406 Gene3D - 51 261 - -
Cam11g1859 406 CDD PAP_phosphatase 56 399 - -
Cam11g1859 406 SUPERFAMILY Carbohydrate phosphatase 61 399 - -
Cam11g1859 406 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 63 405 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Cam11g1859 406 Gene3D - 270 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1859 K01082 - - csv:101215869 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1576 Cam-Chr1:29255213 Cam11g1859 Cam-Chr11:31159972 3.60E-66 dispersed
Cam01g2310 Cam-Chr1:35258677 Cam11g1859 Cam-Chr11:31159972 6.70E-17 dispersed
Cam11g1856 Cam-Chr11:31149391 Cam11g1859 Cam-Chr11:31159972 5.40E-08 proximal
Cam11g1859 Cam-Chr11:31159972 Cam03g0563 Cam-Chr3:6444343 1.60E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g277 Blo03g00636 . Bda07g00281 . . . . . . . . Cma09g00889 Car01g01014 Car09g00806 Sed04g3152 Cpe06g00712 Cpe02g00719 Bhi09g02007 Tan01g4439 Cmetu04g1200 . Hepe01g1361 Mch11g1105 . Cla11g01794 Cam11g1859 Cec11g1883 Cco11g1890 Clacu11g2021 Cmu11g1829 Cre11g2235 Cone6ag0120 . . . Lsi04g01292 . . . . . . . Bpe11g00497 Bpe01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .