Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1862 ATGGTGAAAATGAAGTTTGTTTCCATGTCTATGGTTATGTCTGTCGTCTTGTTCATGTGTATTGGATCTTACGCCTCTTTCACTCCCATTGATAACTATTTGATATCGTGTGGTTCGACACAAAACATCACCTTCCAAGGGAGAACGTTTGTTCCTGATTCTGGACATTCATTGCTCTCCAATGATGGTGAAAGCTCTGTTGTTGTTAGTTCAAAAGGCACTACTGCTCCATCTCCAATCTATCAATCTGCTCGGGTTTTCACGAGCATTGCTTCGTATAAATTCGAAATCAAGAAAGAAGGCCGGCATTGGGTTCGATTGTATTTTTATCCTATTCCTAAGTCAGAGAGGAATCTTGCATCTGCATCAATTACTGTTGTTACTGAGAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAACTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTCAGATTCCTTGACCCTTACTTTCATTCCGTCCAATGGTTCTGTTTCATTTGTTAATGCGATTGAAGTTGTCTCGATGCCTGATGAGCTGATACCTGACCAAGCATTGGCTTTGAATCCATCTGCTCCTTTTAGCGGTATCTCGGAACTTGCTTTTGAAACTGTTTACCGGCTGAATATGGGGGGTCCTTTACTCACTTCACAAAATGATACGCTTGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAATAGTTCTGCAGTGAATGTCTCTGCCAACCCCGGGAGCATAAAATATCATGCTGGTGTGACACCAGAAACTGCACCAAATTGGGTTTATGCGACTGCCGATGCCATGGGAGACCCAAATGTACCGAACGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAGCCAAATTTTCAATACTTTGTCAGAGTGCACTTTTGTGATATAATGAGCAAGGCTCTCAATAATCTGGTTTTCAATCTTTACATCAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCGTCGTTAACCGGTGACTTAGGTGTGCCTTATTACAAAGACTTCATTTCCAACTCAGCAGATTCGACTACTTTGACCGTTAGTGTCGGTCCAGATACAATGGCAGACATCACCAATGCAACCATGAATGGATTGGAGATTATGAAGATAAGCAACCAAGCTGGGAGCTTGGATGGAACTTCATCTGTTGAAAGTCTTTTCCCAGATTCGCCTTCAAAGAAGAACAATATAGCAATCATTGTTGGTTGTGTCTTGGGAGCTGTAGTTGGCCTTGCTTTGCTCATCTTGTGTTATTGCTGTTACATAGGACGCAAGTCAAAGACTACTCAACCACCACACCCTTGGCTGCCTTTGCCCTTATATGGGAACTCTCAAACCATTACAAAAGTGTCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGTCTCGGCAGATTCTTCACATTTCAGGAAATTCTTGATGCTACCAACAAATTTGACGAAAATCTGCTCCTTGGAGTTGGTGGTTTTGGTAGAGTTTACAAGGGAACACTTGAAGATGGTATGAAAGTTGCTGTTAAAAGAGGTAACCCCAGATCAGAGCAAGGTCTTGCCGAATTTCGAACTGAAATAGAAATGTTATCAAAGCTCCGACATCGTCACCTAGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGATTCTTGTCTATGAGTACATGGCAAATGGACCTCTCAGGAGTCACTTGTATGGAACAGATCTACCACCGTTGTCGTGGAAGCAACGACTTGATATTTGCATTGGTGCTGCGAGGGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATTATACACCGAGATGTTAAAACCACAAACATTCTCTTGGACGAGAATTTTGTTGCCAAAGTTGCAGACTTTGGTCTCTCAAAAACTGGGCCATCTCTGGATCAGACTCATGTAAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTCGATCCTGAATACTTCAGGCGACAACAGCTCACTGAGAAGTCAGATGTATATTCATTCGGGGTTGTGCTAATGGAAGTTCTCTGCACGAGGCCAGCGCTAAACCCTGTTCTGCCCCGAGAACAAGTCAATATAGCAGAATGGGCAATGACCTGGCAGAAGAAGGGCATGCTAGATCATATTATGGACCCAAATCTGGTAGGTAAAGTTAATCCAGCATCACTTAAGAAGTTTGGTGAAACAGCTGAGAAGTGTCTGGCCGAGTATGGGGTTGACAGGCCATCTATGGGAGACGTCCTGTGGAACCTGGAATATGCTCTTCAGCTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAATCACATCCCTACCATCCAACTGACCCCACTTGAGCCATTTGATAATAGTGTAAGCATGATTGATGGAGGGAACTCTGGCACCGACGATGATGCAGAAGATGCTGCAACAAGTGCAGTATTTTCACAGCTCGTAAATCCTCGTGGGAGATGA 2529 43.06 MVKMKFVSMSMVMSVVLFMCIGSYASFTPIDNYLISCGSTQNITFQGRTFVPDSGHSLLSNDGESSVVVSSKGTTAPSPIYQSARVFTSIASYKFEIKKEGRHWVRLYFYPIPKSERNLASASITVVTEKFVLLNNFTFKNYNGSFMFKEYAINVTSDSLTLTFIPSNGSVSFVNAIEVVSMPDELIPDQALALNPSAPFSGISELAFETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSANPGSIKYHAGVTPETAPNWVYATADAMGDPNVPNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKALNNLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFISNSADSTTLTVSVGPDTMADITNATMNGLEIMKISNQAGSLDGTSSVESLFPDSPSKKNNIAIIVGCVLGAVVGLALLILCYCCYIGRKSKTTQPPHPWLPLPLYGNSQTITKVSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31189357 31191885 + CaPI482276_11g018620.1 Cam11g1862 140784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1862 842 SUPERFAMILY Protein kinase-like (PK-like) 478 772 IPR011009 -
Cam11g1862 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1862 842 SMART serkin_6 501 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1862 842 CDD STKc_IRAK 507 772 - -
Cam11g1862 842 Gene3D Phosphorylase Kinase; domain 1 459 576 - -
Cam11g1862 842 Gene3D Transferase(Phosphotransferase) domain 1 577 794 - -
Cam11g1862 842 Pfam Protein tyrosine and serine/threonine kinase 507 698 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1862 842 ProSiteProfiles Protein kinase domain profile. 501 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1862 842 MobiDBLite consensus disorder prediction 806 827 - -
Cam11g1862 842 FunFam receptor-like protein kinase FERONIA 463 576 - -
Cam11g1862 842 FunFam Receptor-like protein kinase FERONIA 577 793 - -
Cam11g1862 842 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524(InterPro)
Cam11g1862 842 FunFam Receptor-like protein kinase FERONIA 207 387 - -
Cam11g1862 842 Pfam Malectin-like domain 35 385 IPR024788 -
Cam11g1862 842 FunFam Putative receptor-like protein kinase 32 183 - -
Cam11g1862 842 PANTHER OS03G0124300 PROTEIN-RELATED 8 440 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Cam11g1862 842 Gene3D - 32 183 - -
Cam11g1862 842 Gene3D - 206 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1736 Cam-Chr2:30412568 Cam11g1862 Cam-Chr11:31189357 2.60E-178 dispersed
Cam05g0992 Cam-Chr5:9006336 Cam11g1862 Cam-Chr11:31189357 1.00E-208 dispersed
Cam09g0228 Cam-Chr9:2919266 Cam11g1862 Cam-Chr11:31189357 1.90E-224 dispersed
Cam11g0512 Cam-Chr11:6549344 Cam11g1862 Cam-Chr11:31189357 3.90E-123 dispersed
Cam11g1356 Cam-Chr11:26279775 Cam11g1862 Cam-Chr11:31189357 1.90E-161 dispersed
Cam11g1862 Cam-Chr11:31189357 Cam09g1057 Cam-Chr9:10932702 2.60E-66 dispersed
Cam01g1760 Cam-Chr1:31205938 Cam11g1862 Cam-Chr11:31189357 5.10E-89 transposed
Cam01g2577 Cam-Chr1:37411229 Cam11g1862 Cam-Chr11:31189357 5.30E-192 transposed
Cam02g1420 Cam-Chr2:26967970 Cam11g1862 Cam-Chr11:31189357 1.50E-180 transposed
Cam02g2129 Cam-Chr2:34044896 Cam11g1862 Cam-Chr11:31189357 7.50E-239 transposed
Cam11g1862 Cam-Chr11:31189357 Cam08g1453 Cam-Chr8:20830452 5.30E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85604 PF12819 Malectin_like 1.80E-39 CL0202 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1862 - - - 0.0