Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1877 ATGGTTACAAAGCTCTTCCTGAGGCCACAATCGCTTCCTCTCACAGCCTTTACCGCGAAATTCATCTTCCCCGGTAAGCATTTTCTCCCGATATGCTTCACCTCACCGTTTTCCTCCACCACAATCCAATCTCAATTCTCCGACCAAAGTTTCCTCTATGGACCTTCTCTTTGCAAGGGCGTCCATCCAGTTCCATCGGTTTCCAGACAGTCTCCAGTCAATCATTCTCGACCTCTTCTCAAGACCCTAATCGGAAATCCGGAGAGGGAGCGTTTGCAAAACGAGGAAAGTGAAGAAGCTCTATTAGATGAAGATGCCTTCACTCGGATTTTCGACATTGCTGCACTTCGAGTTCCTTCCAGAGGCTGTTTCGAGCTTGAGAATCGGTTGCGTGGGCATCTCTTGAATTGGCCGCGGATTCGCAACATTGCTAGAGTTCCCGGCGATGAGGTCGAGGCCGAATTGGTGGAGTTTGTGGGAGAGCAGAATTGGAGCAATTCCGATGATGGAGATGGAATTGGTATTGATTCGTTGCATCGGAGAATTTATGGGAAAGCTGAGGGCGATGGGGAGCCTCTGAGTCCCGTATTGTACAGGGAAAAGCTAGTGAAAACGTTTGATTCAAAAGGATACGTGAACTTCAGACATTTGGCGAAAATGTCAAGGCCGAAGAAAAGGAAGGAGAAGAAGGAAGAAGGGAGAGATGAAGGGACGAGAAGAATGGGGAAAAGTAAAGTTGCCGCCGTGGAGGTTGTGGAGAGTGAGGAACTGGAAGTGGATGATATGAAGGGATTGTTGGGAGATGAGTTTAAGGGTGGAAAATGGAGGGGTTCGACTAGATTGTTGCTTTTGGATGAACGATACGCAGACAAAGGCATTGAAGAACTTCCAGAAGCGATTAAGGCTCTGCTGAAAGAAGATACCCAAGAAAAGATGAAACCGACAACTGAGCTAGTGAGGTGCAGGCTTACTTTATTTTATGATTATTGGCAGATGAATGAGGTTTTGGAGGCTTTGCTTCCAAAGGATATGATTATTCCTTCAGCCTTTGAAACTGTTGGACATATTGCACACTTAAACCTTAGAGATGAACATCTCCCATACAATAAGCTTATAGCCAAGGTTGTTTTGGATAAAAATAAGCCAAAGATACAAACAGTGGTGAATAAGATTGATGTCATCAACAATGATTACAGGACAATGCAACTGGAGGTTTTAGCTGGGAACCACTCCCTTGTGACCACAGTAGTTGAGAATGGTTTACGATTTCATTTGGACTTGGCAACAGTGTACTGGAATTCAAGGCTCGCAACTGAGAGACACACGCTAATAAGTGGCTTTACCTGCAATGATGTTGTTTGTGATGTCTTTGCTGGAGTTGGTCCAATATCGATATCTGCCGCAAGAATAGTAAAGAAAGTATATGCCAATGACTTGAATCCCTATGCGGTTGAGTATCTGGAAAGAAATAGTGTTGCCAATAAACTCGAGAGGAAGATTGAGGTATTTAACATGGAAGGAAGGAGATTCATCAGCGCTATTTTTGCAAGTGAGAAAGCTCCCAAAATAACACAAGTTGTTATGAATTTGCCAAATGATGCTGCTGAATATCTAGATGCTTTCAAAGGAATACTAAGAGACCGGTCAGATATAGAATTTACATTGCCAATGATCCATGTTTACGGATTCTCTAAAGCTCGAGATCCAGAATTCGACTTTCATGAGAGGATAAGAATTGCACTAACTGAGGTTGCAGTTGACGTGGATATGCGAAGGGTCCGACTTGTCGCACCAGGAAAATGGATGCTATGTGCTTCATTTAGACTTCCCAGAACTGTAGCTTTATCAAAGCCTACACTTAACAACATGTAA 1872 43.7 MVTKLFLRPQSLPLTAFTAKFIFPGKHFLPICFTSPFSSTTIQSQFSDQSFLYGPSLCKGVHPVPSVSRQSPVNHSRPLLKTLIGNPERERLQNEESEEALLDEDAFTRIFDIAALRVPSRGCFELENRLRGHLLNWPRIRNIARVPGDEVEAELVEFVGEQNWSNSDDGDGIGIDSLHRRIYGKAEGDGEPLSPVLYREKLVKTFDSKGYVNFRHLAKMSRPKKRKEKKEEGRDEGTRRMGKSKVAAVEVVESEELEVDDMKGLLGDEFKGGKWRGSTRLLLLDERYADKGIEELPEAIKALLKEDTQEKMKPTTELVRCRLTLFYDYWQMNEVLEALLPKDMIIPSAFETVGHIAHLNLRDEHLPYNKLIAKVVLDKNKPKIQTVVNKIDVINNDYRTMQLEVLAGNHSLVTTVVENGLRFHLDLATVYWNSRLATERHTLISGFTCNDVVCDVFAGVGPISISAARIVKKVYANDLNPYAVEYLERNSVANKLERKIEVFNMEGRRFISAIFASEKAPKITQVVMNLPNDAAEYLDAFKGILRDRSDIEFTLPMIHVYGFSKARDPEFDFHERIRIALTEVAVDVDMRRVRLVAPGKWMLCASFRLPRTVALSKPTLNNM 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31326805 31331384 + CaPI482276_11g018770.1 Cam11g1877 140799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1877 623 MobiDBLite consensus disorder prediction 225 243 - -
Cam11g1877 623 FunFam tRNA (guanine(37)-N1)-methyltransferase 332 410 - -
Cam11g1877 623 CDD AdoMet_MTases 453 504 - -
Cam11g1877 623 FunFam tRNA (guanine(37)-N1)-methyltransferase 413 609 - -
Cam11g1877 623 MobiDBLite consensus disorder prediction 220 245 - -
Cam11g1877 623 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 99 611 IPR025792 GO:0030488(InterPro)|GO:0052906(InterPro)
Cam11g1877 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 346 611 IPR029063 -
Cam11g1877 623 PANTHER TRNA METHYLTRANSFERASE 110 612 - GO:0002939(PANTHER)|GO:0005737(PANTHER)|GO:0008175(PANTHER)|GO:0009019(PANTHER)|GO:0030488(PANTHER)
Cam11g1877 623 Gene3D Vaccinia Virus protein VP39 413 609 IPR029063 -
Cam11g1877 623 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 350 611 IPR030382 -
Cam11g1877 623 Gene3D - 331 409 - -
Cam11g1877 623 Pfam Met-10+ like-protein 349 549 IPR030382 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1877 K15429 - - csv:101209881 1057.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0289 Cam-Chr11:4398084 Cam11g1877 Cam-Chr11:31326805 1.00E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g321 . . . . . . . . . . . . . . . Cpe06g00725 . . . . . . . . Cla11g01811 Cam11g1877 Cec11g1900 Cco11g1908 Clacu11g2041 Cmu11g1846 Cre11g2251 Cone6ag0106 Cone9ag0126 . . Lsi04g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .