Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1887 ATGGAGAATTTGGAATCTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCTACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGCTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTTCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCACCCCTGTGCAGTCCTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAGACCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGCGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATCGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGAGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGTGTCCAGTTGGGTTCTTCTAGCAATTTCTGGATATCCTGTGATAGAGATATTTGAATAG 1740 45.17 MENLESGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFRRLVFAIHDLGIALLDGFFSHSFEVKEMARSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKDPPIPIHRPITRKFAAQLANKQQPPAPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVEFHQKAGTGKLTGVHRKYCTSKFGYAARNSVSSWVLLAISGYPVIEIFE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31406877 31412735 - CaPI482276_11g018870.1 Cam11g1887 140809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1887 579 ProSitePatterns Cyclins signature. 347 378 IPR048258 -
Cam11g1887 579 Gene3D - 317 556 - -
Cam11g1887 579 Pfam Cyclin, N-terminal domain 317 443 IPR006671 -
Cam11g1887 579 Pfam Cyclin, C-terminal domain 445 557 IPR004367 -
Cam11g1887 579 SUPERFAMILY Cyclin-like 307 442 IPR036915 -
Cam11g1887 579 FunFam G2/mitotic-specific cyclin-1 422 557 - -
Cam11g1887 579 CDD CYCLIN_AtCycB-like_rpt1 296 440 - -
Cam11g1887 579 SMART Cyclin_C_2 445 562 IPR004367 -
Cam11g1887 579 Gene3D - 331 443 - -
Cam11g1887 579 SMART cyclin_7 352 436 IPR013763 -
Cam11g1887 579 SMART cyclin_7 449 531 IPR013763 -
Cam11g1887 579 PANTHER CYCLINS 293 549 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam11g1887 579 SUPERFAMILY Cyclin-like 444 559 IPR036915 -
Cam11g1887 579 MobiDBLite consensus disorder prediction 239 260 - -
Cam11g1887 579 MobiDBLite consensus disorder prediction 224 263 - -
Cam11g1887 579 CDD CYCLIN_AtCycB-like_rpt2 445 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1887 K21777 - - csv:101223199 764.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2139 Cam-Chr1:34209478 Cam11g1887 Cam-Chr11:31406877 1.00E-130 dispersed
Cam01g2143 Cam-Chr1:34230933 Cam11g1887 Cam-Chr11:31406877 2.60E-33 dispersed
Cam04g0578 Cam-Chr4:19471980 Cam11g1887 Cam-Chr11:31406877 2.20E-67 dispersed
Cam09g0235 Cam-Chr9:2993662 Cam11g1887 Cam-Chr11:31406877 4.00E-46 dispersed
Cam09g2316 Cam-Chr9:37584174 Cam11g1887 Cam-Chr11:31406877 2.60E-58 dispersed
Cam11g1887 Cam-Chr11:31406877 Cam05g1878 Cam-Chr5:27696219 1.90E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2367 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.7 2.1e-151 531.9
Cam04g0610 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.4e-96 347.1
Cam11g1918 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.3e-93 338.6
Cam04g0610 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Cam11g1918 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.2e-118 420.2
Cam05g2367 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 1.7e-92 336.3
Cam04g0610 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.6e-123 438.3
Cam11g1918 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.8e-93 338.6
Cam11g1918 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cam04g0610 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.3e-118 420.2
Cam05g2367 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.4e-94 340.5
Cam11g1918 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.4e-160 560.8
Cam04g0610 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.4e-120 428.3
Cam05g2367 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.3e-97 351.3
Cam02g2482 . 57 571 Core Cell Cycle Gene Families AT5G10270 75.5 1.0e-219 759.6
Cam10g1268 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.7e-209 725.7
Cam03g1660 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Cam08g0065 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.3 1.7e-97 353.6
Cam05g1097 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Cam05g0674 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.8e-97 352.4
Cam03g0395 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 1.1e-96 350.9
Cam11g0058 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.2e-96 349.0
Cam02g1825 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.3 2.3e-94 343.2
Cam02g1691 . 683 1001 Core Cell Cycle Gene Families AT5G10270 51.0 5.2e-94 342.0
Cam04g1236 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Cam02g1824 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 2.4e-91 333.2
Cam02g2482 . 121 570 Core Cell Cycle Gene Families AT5G64960 72.7 8.1e-179 623.6
Cam10g1268 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.2 2.5e-172 602.1
Cam05g1097 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cam03g0395 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 4.6e-81 298.9
Cam02g1825 . 247 509 Core Cell Cycle Gene Families AT5G64960 53.2 7.8e-81 298.1
Cam03g1660 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 7.8e-81 298.1
Cam08g0065 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.6 1.0e-80 297.7
Cam11g0058 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cam02g1824 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 2.3e-80 296.6
Cam05g0674 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Cam06g1591 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 3.7e-172 601.3
Cam06g1591 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.1e-155 545.4
Cam06g1591 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 3.9e-174 607.8
Cam04g0113 . 32 484 Core Cell Cycle Gene Families AT5G63610 78.0 7.0e-202 700.3
Cam11g0316 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.4 2.0e-175 612.5
Cam08g1030 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.8 2.6e-145 512.3
Cam09g0235 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.3e-88 323.9
Cam05g1878 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.4 1.5e-84 310.5
Cam05g2238 . 340 619 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Cam08g2100 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.6e-78 290.4
Cam08g1748 . 314 575 Core Cell Cycle Gene Families AT1G44110 53.4 1.7e-75 280.4
Cam09g0235 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.0e-77 286.2
Cam05g1878 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.4 2.8e-75 279.6
Cam05g2238 . 345 617 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Cam08g1748 . 314 571 Core Cell Cycle Gene Families AT1G77390 50.8 1.2e-67 254.2
Cam05g1878 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.7 5.3e-119 424.9
Cam08g1748 . 147 587 Core Cell Cycle Gene Families AT5G25380 51.6 7.0e-103 371.3
Cam09g0235 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 5.6e-100 361.7
Cam08g1030 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 4.4e-81 298.9
Cam05g2238 . 344 612 Core Cell Cycle Gene Families AT5G25380 52.0 2.8e-75 279.6
Cam02g0694 . 119 344 Core Cell Cycle Gene Families AT5G25380 51.9 1.4e-58 224.2
Cam05g1878 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.8 1.5e-94 343.6
Cam08g1030 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Cam05g2238 . 340 556 Core Cell Cycle Gene Families AT5G11300 55.3 7.3e-62 235.0
Cam08g2100 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Cam02g0694 . 119 286 Core Cell Cycle Gene Families AT5G11300 52.1 6.4e-42 168.7
Cam09g0235 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 2.7e-118 422.5
Cam08g1030 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.4e-81 299.3
Cam02g0694 . 119 348 Core Cell Cycle Gene Families AT1G15570 51.1 7.0e-58 221.9
Cam09g0235 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 2.5e-119 426.0
Cam08g1030 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.6e-81 300.4
Cam05g2238 . 340 617 Core Cell Cycle Gene Families AT1G80370 51.4 9.0e-77 284.6
Cam08g2100 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Cam02g0694 . 119 349 Core Cell Cycle Gene Families AT1G80370 51.7 6.0e-57 218.8
Cam08g2100 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 8.2e-115 410.6
Cam05g2238 . 245 620 Core Cell Cycle Gene Families AT5G43080 56.9 2.2e-112 402.5
Cam08g1030 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 2.5e-79 292.7
Cam05g1878 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.6e-79 291.6
Cam09g0235 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 5.8e-76 281.6
Cam08g1748 . 311 589 Core Cell Cycle Gene Families AT5G43080 50.4 3.5e-73 272.3
Cam08g2100 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 6.0e-124 441.0
Cam05g2238 . 245 620 Core Cell Cycle Gene Families AT1G47210 54.4 1.4e-112 403.3
Cam09g0235 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 7.2e-77 284.6
Cam05g1878 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.2e-76 283.9
Cam08g1748 . 311 577 Core Cell Cycle Gene Families AT1G47210 50.6 7.8e-71 264.6
Cam05g2238 . 340 621 Core Cell Cycle Gene Families AT1G47220 59.2 4.0e-95 345.1
Cam08g2100 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.3e-93 337.8
Cam05g1878 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 6.2e-72 268.1
Cam05g2238 . 245 620 Core Cell Cycle Gene Families AT1G47230 57.3 3.5e-116 415.2
Cam08g2100 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.4 5.1e-115 411.4
Cam02g0694 . 66 352 Core Cell Cycle Gene Families AT1G47230 54.0 1.9e-77 286.6
Cam08g1030 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.2e-76 283.9
Cam09g0235 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.3e-73 273.9
Cam05g1878 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Cam04g0578 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 1.2e-115 413.7
Cam04g0578 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 4.0e-82 302.0
Cam02g2334 . 806 1008 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Cam01g2139 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.0e-45 181.0
Cam04g0578 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.8e-105 378.6
Cam01g2139 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 6.8e-62 235.0
Cam02g2334 . 718 1114 Core Cell Cycle Gene Families AT2G26760 52.6 1.4e-107 386.7
Cam01g2139 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 4.7e-128 454.9
Cam11g1887 . 167 566 Core Cell Cycle Gene Families AT2G17620 52.0 5.6e-105 378.3
Cam01g2139 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.1e-103 372.9
Cam11g1887 . 160 523 Core Cell Cycle Gene Families AT4G35620 53.4 7.6e-90 327.8
Cam02g2334 . 841 1067 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Cam11g1887 . 131 566 Core Cell Cycle Gene Families AT1G20610 63.6 8.8e-143 503.8
Cam01g2139 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 2.9e-122 435.6
Cam11g1887 . 131 463 Core Cell Cycle Gene Families AT1G76310 63.5 8.3e-104 374.0
Cam01g2139 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 6.8e-82 301.2
Cam04g0578 . 177 343 Core Cell Cycle Gene Families AT1G76310 52.1 2.0e-41 166.8
Cam02g2334 . 837 1004 Core Cell Cycle Gene Families AT1G76310 52.4 5.8e-41 165.2
Cam09g2102 . 13 330 Core Cell Cycle Gene Families AT1G70210 65.6 3.1e-111 398.7
Cam05g2700 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.4e-105 378.3
Cam01g1891 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 3.9e-83 305.4
Cam05g1186 . 14 335 Core Cell Cycle Gene Families AT4G34160 51.1 4.1e-80 295.4
Cam08g2089 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.2 1.2e-66 250.8
Cam02g0660 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.5e-61 233.0
Cam05g2226 . 347 594 Core Cell Cycle Gene Families AT5G67260 51.4 9.0e-65 244.6
Cam01g1891 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Cam08g1609 . 131 330 Core Cell Cycle Gene Families AT5G65420 55.9 5.3e-61 231.5
Cam01g1891 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.2e-56 214.2
Cam08g1609 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 9.1e-51 197.2
Cam01g1694 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.1 4.3e-104 374.8
Cam01g1361 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.2e-44 172.9
Cam02g2241 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.0e-42 169.1
Cam01g1361 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Cam02g2241 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.9e-39 157.1
Cam05g2894 . 300 1318 Core Cell Cycle Gene Families AT3G12280 71.9 0.0e+00 1411.4
Cam09g0605 . 2 484 Core Cell Cycle Gene Families AT1G02970 60.2 2.0e-159 559.3