Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1887 ATGGAGAATTTGGAATCTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCTACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGCTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTTCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCACCCCTGTGCAGTCCTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAGACCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGCGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATCGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGAGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGTGTCCAGTTGGGTTCTTCTAGCAATTTCTGGATATCCTGTGATAGAGATATTTGAATAG 1740 45.17 MENLESGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFRRLVFAIHDLGIALLDGFFSHSFEVKEMARSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKDPPIPIHRPITRKFAAQLANKQQPPAPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVEFHQKAGTGKLTGVHRKYCTSKFGYAARNSVSSWVLLAISGYPVIEIFE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31406877 31412735 - CaPI482276_11g018870.1 Cam11g1887 140809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1887 579 ProSitePatterns Cyclins signature. 347 378 IPR048258 -
Cam11g1887 579 Gene3D - 317 556 - -
Cam11g1887 579 Pfam Cyclin, N-terminal domain 317 443 IPR006671 -
Cam11g1887 579 Pfam Cyclin, C-terminal domain 445 557 IPR004367 -
Cam11g1887 579 SUPERFAMILY Cyclin-like 307 442 IPR036915 -
Cam11g1887 579 FunFam G2/mitotic-specific cyclin-1 422 557 - -
Cam11g1887 579 CDD CYCLIN_AtCycB-like_rpt1 296 440 - -
Cam11g1887 579 SMART Cyclin_C_2 445 562 IPR004367 -
Cam11g1887 579 Gene3D - 331 443 - -
Cam11g1887 579 SMART cyclin_7 352 436 IPR013763 -
Cam11g1887 579 SMART cyclin_7 449 531 IPR013763 -
Cam11g1887 579 PANTHER CYCLINS 293 549 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam11g1887 579 SUPERFAMILY Cyclin-like 444 559 IPR036915 -
Cam11g1887 579 MobiDBLite consensus disorder prediction 239 260 - -
Cam11g1887 579 MobiDBLite consensus disorder prediction 224 263 - -
Cam11g1887 579 CDD CYCLIN_AtCycB-like_rpt2 445 558 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2139 Cam-Chr1:34209478 Cam11g1887 Cam-Chr11:31406877 1.00E-130 dispersed
Cam01g2143 Cam-Chr1:34230933 Cam11g1887 Cam-Chr11:31406877 2.60E-33 dispersed
Cam04g0578 Cam-Chr4:19471980 Cam11g1887 Cam-Chr11:31406877 2.20E-67 dispersed
Cam09g0235 Cam-Chr9:2993662 Cam11g1887 Cam-Chr11:31406877 4.00E-46 dispersed
Cam09g2316 Cam-Chr9:37584174 Cam11g1887 Cam-Chr11:31406877 2.60E-58 dispersed
Cam11g1887 Cam-Chr11:31406877 Cam05g1878 Cam-Chr5:27696219 1.90E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1887 K21777 - csv:101223199 764.222