Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1888 ATGGGGACGGCATTACTAAAGCGGAAGCCACGGATTCTCCACCTCGTCTTTGAGTCTCTCGCTTCTTCTCCTCTTCCAATGGATCCTTACAGGCACCGACCTTCAAGTGGTTACAACACCCCCTTCTGGACTACCAATTCTGGTGCACCAGTGTGGAACAACAACTCCTCGATGACCGTTGGACCCAGGGGACCTATTCTCCTAGAGGATTATCATCTTGTGGAGAAACTTGCTAACTTTGATAGAGAGCGGATCCCAGAGCGTGTTGTTCATGCTAGAGGAGCTAGTGCAAAAGGGTTTTTTGAGGTGACTCATGATATCACCCACCTTACTTGTGCTGATTTTCTTCAAGCCCCTGGAGTTCGGACTCCAGTTATTGTACGTTTCTCCACTGTTATCCATGAGCGTGGAAGCCCTGAAACGCTCAGAGATCCTCGAGGTTTTGCAGTCAAGTTTTACACCAGGGAGGGTAATTTTGATCTTGTGGGCAACAACTTCCCTGTATTTTTCGTCCGTGACGGTATGAAATTTCCAGACATGGTACATGCTCTTAAACCGAATCCCAAGTCCCATATCCAGGAGAATTGGAGGATCCTTGACTTCTTTTCTCACCATCCTGAAAGCCTGCACATGTTCACATTTCTATTTGATGATCTTGGCATTCCACAAGATTACAGGCACATGGACGGTTCAGGTGTTAATACGTATACTCTGATTAACAAGGAAGGGAAAGCACACTATGTGAAATTTCATTGGAGGCCTACCTGTGGAGTCAAATCTTTGTTGGATGAAGAAGCCATCCGTGTTGGAGGAAGTAATCATAGCCATGCTACTCAGGACCTTTATGATTCAATTGCAGCGGGCAACTACCCTGAGTGGAAGCTTTTTATTCAGACTATTGACCCTGATCATGAAGATAAATATGACTTTGACCCTCTAGATGTAACCAAGACCTGGCCCGAGGATATCTTGCCCTTGCAGCCAGTTGGTCGCATGGTTTTGAATAAGAACATCGATAACTTCTTTGCAGAGAATGAACAATTGGCCTTTTGTCCTGCCATTATAGTTCCTGGAATCTACTATTCAGATGACAAATTGCTTCAGACTAGGATCTTCTCCTATGCCGATACTCAGAGACACCGTCTTGGACCAAACTATTTGCAGCTCCCTGCTAATGCACCTAAGTGTGCTCATCACAACAATCACCACGAGGGTTTCATGAACTTCATGCACCGAGATGAAGAGGTCAATTACTTCCCTTCAAGAATAGATCCTGCTCACCATGCCGAGAGGTATCCTCAACCACCTGCGCTATACACTGGAAAGCGTGAAAGGTGTGTAATTGTGAAGGAGAACAACTTCAAGCAGCCTGGAGAGAGATACAGATCTTGGACATCAGACAGGCAAGAACGATTTATCCGTAGATGGGTGGATGCTTTGTCGGACCCTCGTGTCACCCACGAGATCCGTAACATCTGGATTTCTTACTGGTCTCAGGCGGACAAGTCGCTGGGCCAGAATCTTGCATCTCATCTCAATGTGAAGTCCATTGGATGCAGCGTGTGCAGTCAGATTAGTGCACATGGCAGTAAACTTTTGATTTTTCCCTTCATATCTGTTTCGGGGGCTTTGAGATTGCAGAGAGTGTGCAAGTTGACTTTACAGCGAGAATTCCAAAGCCGGACGCAAAGAGGGACACTTCTTCTTCTTCCTGCCCATTTCAGGAACAGTGCAGAAATAATTATAACTACCCACTTGGGAATCTCTTCGAATCTTTCAAATTTGTTGGTTCTTCCTAAACATGGACTGGAATTTCTTCTTCTGGGGTGGTATCTGATATTGGATCGGTTCAGGTTATATCTGATTCAGTGCTGA 1875 45.55 MGTALLKRKPRILHLVFESLASSPLPMDPYRHRPSSGYNTPFWTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLTCADFLQAPGVRTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFTFLFDDLGIPQDYRHMDGSGVNTYTLINKEGKAHYVKFHWRPTCGVKSLLDEEAIRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDKYDFDPLDVTKTWPEDILPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRIDPAHHAERYPQPPALYTGKRERCVIVKENNFKQPGERYRSWTSDRQERFIRRWVDALSDPRVTHEIRNIWISYWSQADKSLGQNLASHLNVKSIGCSVCSQISAHGSKLLIFPFISVSGALRLQRVCKLTLQREFQSRTQRGTLLLLPAHFRNSAEIIITTHLGISSNLSNLLVLPKHGLEFLLLGWYLILDRFRLYLIQC 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31422808 31438033 + CaPI482276_11g018880.1 Cam11g1888 140810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1888 624 Pfam Catalase 44 423 IPR011614 GO:0004096(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 Pfam Catalase-related immune-responsive 450 511 IPR010582 -
Cam11g1888 624 Gene3D Catalase core domain 34 528 - -
Cam11g1888 624 SMART Catalase_2 44 427 IPR011614 GO:0004096(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 FunFam Catalase 40 517 - -
Cam11g1888 624 ProSitePatterns Catalase proximal active site signature. 80 96 IPR024708 GO:0004096(InterPro)
Cam11g1888 624 PRINTS Catalase signature 160 178 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 PRINTS Catalase signature 325 352 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 PRINTS Catalase signature 120 138 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 PRINTS Catalase signature 141 158 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 PRINTS Catalase signature 357 383 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 PRINTS Catalase signature 57 80 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 CDD catalase_clade_1 42 510 - -
Cam11g1888 624 ProSiteProfiles catalase family profile. 40 518 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam11g1888 624 PANTHER CATALASE 39 518 IPR018028 GO:0004096(PANTHER)|GO:0004096(InterPro)|GO:0005737(PANTHER)|GO:0005777(PANTHER)|GO:0005886(PANTHER)|GO:0006979(InterPro)|GO:0020037(PANTHER)|GO:0020037(InterPro)|GO:0042542(PANTHER)|GO:0042744(PANTHER)
Cam11g1888 624 SUPERFAMILY Heme-dependent catalase-like 35 516 IPR020835 GO:0020037(InterPro)
Cam11g1888 624 ProSitePatterns Catalase proximal heme-ligand signature. 370 378 IPR002226 GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1888 K03781 - - csv:101202931 998.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g1888 Cam-Chr11:31422808 Cam08g1392 Cam-Chr8:20201762 6.60E-240 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g98 Blo01g01636 Blo12g00854 . Bda03g00319 Bpe02g00309 Bpe04g00280 Bma04g00287 Bma01g02409 Cmo05g00996 Cmo12g00616 Cma01g02012 Cma09g00054 Car01g01582 Car12g00658 . Cpe06g00023 Cpe07g00589 Bhi04g01227 . . . Hepe08g1506 . . Cla08g00942 Cam08g1392 Cec08g0974 Cco08g1097 Clacu08g1099 . Cre08g0883 . . . . Lsi04g01805 Csa04g02699 . Cme03g01342 . . Bda11g00972 . . . . . Sed08g1839 . . Cma12g00678 Cma05g00977 Car05g00858 Car09g00047 Cpe11g00788 Cpe02g00036 Bhi09g02890 Tan01g5104 Cmetu03g1562 . Hepe01g2339 Mch11g0058 . Cla11g01822 Cam11g1888 Cec11g1913 Cco11g1920 Clacu11g2052 Cmu11g1857 Cre11g2263 Lsi08g00787 . Chy07g00390 Cme07g00057