Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1902 ATGGCTACGGGTATAGATTTTTCACCTCCCTTCACTCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGTCATAGTCTGAGCTCCATAAAGCTCCTTGGCCAAGCTGATTTAAGCTTGGATGCTGAAACTCTTGGGAATAAGTCACCTGATGGAAAAGCGGGATACTTACCTGTCTTTAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATAGATGATCTTGTTGAACATGTCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGTACAGACGCTGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTAGTGTGGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTGACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTTCTGGGGAGGAGGGGGAAGGCTATCGAGGTGTCGAAGGATCACAAGCCCAACTGTGCTTCTGAAAAGCTCAGAATTGAGAAACTGGGTGGGGTGATCTATGATGGGTACCTCAATGGCCAGCTCTCTGTTGCACGTGCTATAGGAGATTGGCACATGAAAGGTGCTAAGGGTTCTGCTTGCCCACTGAGTGCCGAGCCAGAGCTGCAGGAACTGAATTTGACGGAGGAAGATGAATTTCTTATAATGGGATGCGATGGGCTTTGGGATGTGATGAGCAGCCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCAGAAAGGTGTTCAAGAGAGCTGGTAAGAGAGGCACTAAAGCGCAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCGGCTGATCCGCCCCCTCGGATAGAAATTCCTCAAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAGGGTGTATTGGACTGCAATTCTTGA 1161 45.74 MATGIDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMSSGKPPRHLSVMRHSLSSIKLLGQADLSLDAETLGNKSPDGKAGYLPVFRSGSCSERGPKQYMEDEHICIDDLVEHVHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPQTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31539920 31543214 - CaPI482276_11g019020.1 Cam11g1902 140824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1902 386 MobiDBLite consensus disorder prediction 29 44 - -
Cam11g1902 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Cam11g1902 386 Gene3D - 76 354 IPR036457 -
Cam11g1902 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Cam11g1902 386 SMART PP2C_SIG_2 106 351 IPR001932 -
Cam11g1902 386 PANTHER PROTEIN PHOSPHATASE 2C 68 351 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cam11g1902 386 MobiDBLite consensus disorder prediction 18 49 - -
Cam11g1902 386 SMART PP2C_4 81 349 IPR001932 -
Cam11g1902 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Cam11g1902 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Cam11g1902 386 CDD PP2Cc 90 351 IPR001932 -
Cam11g1902 386 FunFam Probable protein phosphatase 2C 22 76 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1773 Cam-Chr2:30886551 Cam11g1902 Cam-Chr11:31539920 1.10E-88 dispersed
Cam06g0425 Cam-Chr6:6378151 Cam11g1902 Cam-Chr11:31539920 6.30E-81 dispersed
Cam11g1902 Cam-Chr11:31539920 Cam09g0478 Cam-Chr9:4938292 1.30E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1902 K14803 - csv:101205355 764.222