Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1903 ATGCTGTGGGTTGCGGCTAAGATAGAAAGTGATTCTCCTCCGCTTTACGGCGATCCCGTTTCGCCTCATCCCGAGGTGGGTACCCCATCCAAAAGCCCATTCTCTAAATTTAAGCCCAGGCCCAAATTGGTTATTAAGAAAGTGGAAAGTGGGAGAATTTTGAGAGTGGCTGTGGTGAAACCTAATCGTCGTCCACTGGAAGAGGCCGAGTCCGAGCCGCCCACTAGGGCGGAAGGGCCCACCTGTGGAGTATCGACGAGCGACTGTAGATGCTGTCACTGTTGCTACACAAAGATTGGGCCTCCAAGTAAAGAACACTCCCCGACTTTTGCTTCATCAACCAATGAAGGAATTTTCTGCTTTTTGTTTTCGAAAAATTTTCACGTGATTTCGCTGAGGTGCGAGTATTTGCCAGCTTCCATCAAACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCGACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTCCCTCTGGTATCATTTTCGGCTACTGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCAGTTGCTGAGATTGTTGAGTATTATAGTTGGAAAGAGGTCATTGCTATATATGTTGATGATGATTATGGGTGGAATGGAGTTGCGACATTGGGCGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTGGATTAGGCGCCTTAGTCTTTTCAGTGGCTAAGTACCTCCAAATGATAGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTATTAGACAGTGTTGTTCCTCTTCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGACAGCACACAGCAGAATCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCATCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGTGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCCTGCTGAATAACATATTGGAGAGCGATTTTGTTGGTCTGACTGGTGCCATTAAGTTTGATTTGGACAGATCCCTTCTTCATCCTGCATATGATATTATTAATGTCATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGTTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTTCCAAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTCCAGGGTTTCTGCATCGATGTGTTTACAGCTGCTGTAAACTTATTGCCGTATGCTGTCCCCCACCAATTTATAGCCTTTGGTGATGGCCATCACAATCCAAATTACACAGATCTTGTGTACGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGGACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACAGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAAAACACAATTAGCACTCTTGGCCGTCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCATTTGCCGAACGTTATCTGAGCGAGGAGCTGAACATATCTAGATCCAGGCTTGTTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAATGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCACCATGGACAATGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTATTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATATTGCTTTCAGATTATTCGTCAGCTATACCGTGCCGATGCACAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGCTTTCGAAGAATTATATCGATATTGGATGAGAAGAAAGAACCGTCTAAAAGGGGAAGCAAAAGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGACGATGATAATTTGGAGGCTGATCCTTGA 3099 43.69 MLWVAAKIESDSPPLYGDPVSPHPEVGTPSKSPFSKFKPRPKLVIKKVESGRILRVAVVKPNRRPLEEAESEPPTRAEGPTCGVSTSDCRCCHCCYTKIGPPSKEHSPTFASSTNEGIFCFLFSKNFHVISLRCEYLPASIKPSVVNIGAILSFNSTIGKVATIAIEEAVKDVNADPSILPGTDLWLQMQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYSWKEVIAIYVDDDYGWNGVATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPGLGALVFSVAKYLQMIGNGYVWIATDWLSSLLDSVVPLPLEIMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLLHPAYDIINVIGTGSRRVGYWSNYSGLSIDVPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLSEELNISRSRLVPLGSPEEYAKALELGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYRADAQESDLSSSSGSHSNRFRRIISILDEKKEPSKRGSKRRKVEKSSENDKDDDNLEADP 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31544418 31553443 + CaPI482276_11g019030.1 Cam11g1903 140825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1903 1032 FunFam Glutamate receptor 577 693 - -
Cam11g1903 1032 SUPERFAMILY Periplasmic binding protein-like II 560 925 - -
Cam11g1903 1032 Gene3D - 573 691 - -
Cam11g1903 1032 Pfam Bacterial extracellular solute-binding proteins, family 3 600 702 IPR001638 -
Cam11g1903 1032 SMART GluR_14 583 925 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam11g1903 1032 CDD PBP1_GABAb_receptor_plant 147 536 IPR044440 -
Cam11g1903 1032 Pfam Ligand-gated ion channel 924 955 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam11g1903 1032 MobiDBLite consensus disorder prediction 997 1024 - -
Cam11g1903 1032 FunFam Glutamate receptor 693 823 - -
Cam11g1903 1032 Gene3D - 889 922 - -
Cam11g1903 1032 FunFam Glutamate receptor 261 415 - -
Cam11g1903 1032 FunFam Glutamate receptor 819 927 - -
Cam11g1903 1032 Pfam Receptor family ligand binding region 164 520 IPR001828 -
Cam11g1903 1032 MobiDBLite consensus disorder prediction 1 37 - -
Cam11g1903 1032 Gene3D - 852 888 - -
Cam11g1903 1032 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 146 1001 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cam11g1903 1032 Gene3D - 164 510 - -
Cam11g1903 1032 Gene3D - 692 820 - -
Cam11g1903 1032 PIRSF IGluLR_plant 114 1031 IPR017103 -
Cam11g1903 1032 CDD GluR_Plant 580 923 - -
Cam11g1903 1032 SUPERFAMILY Periplasmic binding protein-like I 142 574 IPR028082 -
Cam11g1903 1032 Gene3D - 261 535 - -
Cam11g1903 1032 MobiDBLite consensus disorder prediction 997 1032 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0349 Cam-Chr2:4228270 Cam11g1903 Cam-Chr11:31544418 2.60E-275 dispersed
Cam02g0964 Cam-Chr2:14035235 Cam11g1903 Cam-Chr11:31544418 3.60E-261 dispersed
Cam02g0965 Cam-Chr2:14091099 Cam11g1903 Cam-Chr11:31544418 4.20E-281 dispersed
Cam02g0967 Cam-Chr2:14142322 Cam11g1903 Cam-Chr11:31544418 5.90E-285 dispersed
Cam08g1934 Cam-Chr8:25269149 Cam11g1903 Cam-Chr11:31544418 7.00E-105 dispersed
Cam11g1796 Cam-Chr11:30493847 Cam11g1903 Cam-Chr11:31544418 1.70E-105 dispersed
Cam11g1903 Cam-Chr11:31544418 Cam01g2149 Cam-Chr1:34262611 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1903 K05387 - csv:101204862 1674.06