Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1908 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTTGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGGGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAATCTGTCGTCGATCTTCAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA 705 53.9 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSRSGSSVCVVNIDFKSVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31567568 31568447 + CaPI482276_11g019080.1 Cam11g1908 140830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1908 234 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cam11g1908 234 MobiDBLite consensus disorder prediction 160 186 - -
Cam11g1908 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cam11g1908 234 CDD RING-H2_EL5-like 102 145 - -
Cam11g1908 234 Pfam Ring finger domain 102 145 IPR001841 -
Cam11g1908 234 SUPERFAMILY RING/U-box 84 151 - -
Cam11g1908 234 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 178 IPR052788 -
Cam11g1908 234 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0013 Cam-Chr10:1787021 Cam11g1908 Cam-Chr11:31567568 1.30E-42 dispersed
Cam10g2236 Cam-Chr10:35622249 Cam11g1908 Cam-Chr11:31567568 1.60E-23 dispersed
Cam11g1908 Cam-Chr11:31567568 Cam02g0072 Cam-Chr2:1822114 9.00E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1908 - - - 0.0