Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam11g1908 | ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTTGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGGGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAATCTGTCGTCGATCTTCAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA | 705 | 53.9 | MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSRSGSSVCVVNIDFKSVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31567568 | 31568447 | + | CaPI482276_11g019080.1 | Cam11g1908 | 140830 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam11g1908 | 234 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Cam11g1908 | 234 | MobiDBLite | consensus disorder prediction | 160 | 186 | - | - | |
Cam11g1908 | 234 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 149 | IPR013083 | - | |
Cam11g1908 | 234 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
Cam11g1908 | 234 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Cam11g1908 | 234 | SUPERFAMILY | RING/U-box | 84 | 151 | - | - | |
Cam11g1908 | 234 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 23 | 178 | IPR052788 | - | |
Cam11g1908 | 234 | SMART | ring_2 | 103 | 144 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam10g0013 | Cam-Chr10:1787021 | Cam11g1908 | Cam-Chr11:31567568 | 1.30E-42 | dispersed | |
Cam10g2236 | Cam-Chr10:35622249 | Cam11g1908 | Cam-Chr11:31567568 | 1.60E-23 | dispersed | |
Cam11g1908 | Cam-Chr11:31567568 | Cam02g0072 | Cam-Chr2:1822114 | 9.00E-25 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam11g1908 | - | - | - | 0.0 |