Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1908 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTTGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGGGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAATCTGTCGTCGATCTTCAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA 705 53.9 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSRSGSSVCVVNIDFKSVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31567568 31568447 + CaPI482276_11g019080.1 Cam11g1908 140830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1908 234 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cam11g1908 234 MobiDBLite consensus disorder prediction 160 186 - -
Cam11g1908 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cam11g1908 234 CDD RING-H2_EL5-like 102 145 - -
Cam11g1908 234 Pfam Ring finger domain 102 145 IPR001841 -
Cam11g1908 234 SUPERFAMILY RING/U-box 84 151 - -
Cam11g1908 234 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 178 IPR052788 -
Cam11g1908 234 SMART ring_2 103 144 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1908 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0013 Cam-Chr10:1787021 Cam11g1908 Cam-Chr11:31567568 1.30E-42 dispersed
Cam10g2236 Cam-Chr10:35622249 Cam11g1908 Cam-Chr11:31567568 1.60E-23 dispersed
Cam11g1908 Cam-Chr11:31567568 Cam02g0072 Cam-Chr2:1822114 9.00E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam01g1548 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cam11g0520 . 100 325 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Cam06g1283 . 105 409 C3H Transcription Factor Family AT1G11020 75.6 1.7e-135 479.2
Cam07g1487 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G08750 61.0 4.7e-121 431.4
Cam10g0890 . 26 456 C3H Transcription Factor Family AT3G16090 71.8 2.4e-168 589.0
Cam11g0520 . 96 324 C3H Transcription Factor Family AT5G38895 57.4 1.2e-73 273.9
Cam08g2009 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.2e-79 293.1
Cam01g1661 . 16 225 C3H Transcription Factor Family AT1G19310 58.4 3.2e-67 251.9
Cam01g1955 . 9 323 C3H Transcription Factor Family AT2G22120 83.9 1.9e-159 558.9
Cam08g1520 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.0e-40 161.8
Cam06g1639 . 30 418 C3H Transcription Factor Family AT1G18470 76.1 5.7e-179 624.0
Cam01g0608 . 128 359 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Cam08g0887 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.0e-169 591.7
Cam08g0887 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.1e-167 584.3
Cam07g0061 . 25 372 C3H Transcription Factor Family AT2G30580 51.1 8.9e-82 300.8
Cam09g2180 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.3e-94 342.0
Cam04g0213 . 91 451 C3H Transcription Factor Family AT5G63780 57.2 7.8e-116 414.1
Cam10g1724 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 3.7e-104 375.6
Cam09g2180 . 48 347 C3H Transcription Factor Family AT4G26580 63.7 6.9e-111 397.5
Cam04g0617 . 28 492 C3H Transcription Factor Family AT5G01960 68.7 6.6e-167 583.9
Cam07g0542 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 1.5e-150 529.6
Cam02g1133 . 1 152 C3H Transcription Factor Family AT2G04240 60.1 1.0e-43 173.3
Cam02g0314 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 4.9e-38 154.5
Cam02g2364 . 1 245 C3H Transcription Factor Family AT5G19430 53.3 2.2e-64 242.7
Cam07g1439 . 130 585 C3H Transcription Factor Family AT5G45290 52.7 6.0e-104 375.2
Cam02g2364 . 40 245 C3H Transcription Factor Family AT5G12310 56.4 2.7e-59 225.7
Cam06g1537 . 412 704 C3H Transcription Factor Family AT5G05810 52.8 2.2e-74 276.6
Cam11g0671 . 53 205 C3H Transcription Factor Family AT5G05830 58.8 4.0e-45 178.3
Cam04g0750 . 482 612 C3H Transcription Factor Family AT5G05830 61.8 3.0e-40 162.2
Cam06g0968 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 6.2e-96 348.2
Cam11g0520 . 100 325 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Cam11g0705 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 4.9e-115 411.0
Cam09g0661 . 35 307 C3H Transcription Factor Family AT1G63900 75.5 9.1e-117 416.8
Cam05g0315 . 10 392 C3H Transcription Factor Family AT2G44580 53.7 1.9e-120 429.5
Cam08g2009 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.0e-41 163.3
Cam05g1761 . 3 314 C3H Transcription Factor Family AT5G20910 63.1 7.1e-110 394.0
Cam10g0890 . 144 444 C3H Transcription Factor Family AT1G65040 69.3 8.6e-111 397.1
Cam01g1661 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 4.3e-72 268.1
Cam08g2009 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.8e-70 260.8
Cam10g1604 . 1 317 C3H Transcription Factor Family AT3G10810 53.3 8.4e-81 298.1
Cam01g0249 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.9e-45 179.1
Cam01g0669 . 18 353 C3H Transcription Factor Family AT1G68070 64.1 6.0e-118 421.0
Cam11g1908 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cam08g1746 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.6e-112 402.5
Cam10g0013 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.1e-39 157.9
Cam08g0887 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.7e-225 777.3
Cam11g0915 . 5 416 C3H Transcription Factor Family AT2G31510 55.0 6.5e-110 394.8
Cam01g1548 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.0e-54 210.3
Cam10g1782 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Cam04g0103 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 4.8e-151 530.8
Cam05g1062 . 671 928 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cam05g1061 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 9.7e-128 453.4
Cam02g2452 . 41 337 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Cam01g0781 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.2e-125 446.4
Cam06g0099 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cam05g2872 . 197 445 C3H Transcription Factor Family AT2G41980 79.1 1.1e-120 429.9
Cam05g0636 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cam10g2000 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.3e-85 313.5
Cam06g1842 . 58 368 C3H Transcription Factor Family AT3G47990 69.7 1.6e-127 452.6
Cam01g1436 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 1.1e-120 429.9
Cam11g1908 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 1.1e-50 196.8
Cam10g0013 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cam09g1833 . 35 403 C3H Transcription Factor Family AT3G18930 54.4 3.0e-84 309.3
Cam10g0047 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 6.9e-75 277.3
Cam10g2038 . 3 273 C3H Transcription Factor Family AT5G02750 53.4 6.1e-68 254.6
Cam06g1639 . 34 490 C3H Transcription Factor Family AT1G73950 72.4 5.9e-195 677.2
Cam08g0171 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.2e-39 157.9
Cam01g0669 . 15 251 C3H Transcription Factor Family AT2G01735 60.8 5.1e-74 274.6
Cam10g0346 . 127 336 C3H Transcription Factor Family AT2G01735 53.3 4.2e-52 201.8