Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1917 ATGTCGGGATCTGAGACCGGAGTGATTTCCAGCGGCGAACCCTTCACCATCGGTCTCCACAAGAATTCAGTACAGTCACAACAGCCGGTCATGCAGGGCATGCATTTATCCTTCGGCGCCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGGCGTCGGAGTTGCCGGTAATGCTGGTTCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATGGCAATGGCTCCTGCAGTCCGCTCTCCCGCCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCACTCAAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTTCTAGCAAAAAGCAGCAGTTGGATGGCTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTACGAGGGGCGATTCGAGATTTTGTCGCTATCTGGGTCCTATCTCCTCTCTGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGTCCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTACAGGTGGTCGTGGGGAGCTTCGTCACTGATGGGGTGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGTCCCCTGTTACTGCACCCCATAAACTTGCTCCAATCCGTGCTGGAATGACGGGAGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCCGGGAGCCAACGTGGAATCTGTTTGGGATGGCTTGGAACCTTGGCCTTGTGCCCGCTGGAAACGAAAGACAGACAGACGACACAGATGGTTTCAGTTAGGAATTAG 1101 53.86 MSGSETGVISSGEPFTIGLHKNSVQSQQPVMQGMHLSFGADGVYKPVAAASPTYQSSGVGVAGNAGSDGSAREAFVNMNSQSEPVKRKRGRPRKYGPDGSMAMAPAVRSPAATQSSGGFSPPPTAAPPSGGSATQTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGVHKELRQVNQIEQSPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSQRGICLGWLGTLALCPLETKDRQTTQMVSVRN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31605971 31608802 - CaPI482276_11g019170.1 Cam11g1917 140839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1917 366 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Cam11g1917 366 MobiDBLite consensus disorder prediction 310 332 - -
Cam11g1917 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 329 IPR039605 GO:0003680(InterPro)
Cam11g1917 366 MobiDBLite consensus disorder prediction 53 165 - -
Cam11g1917 366 CDD DUF296 166 280 IPR005175 -
Cam11g1917 366 MobiDBLite consensus disorder prediction 317 332 - -
Cam11g1917 366 FunFam AT-hook motif nuclear-localized protein 1-like 167 298 - -
Cam11g1917 366 Gene3D - 167 300 - -
Cam11g1917 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Cam11g1917 366 SMART AT_hook_2 139 151 IPR017956 GO:0003677(InterPro)
Cam11g1917 366 SMART AT_hook_2 86 98 IPR017956 GO:0003677(InterPro)
Cam11g1917 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 289 - -
Cam11g1917 366 MobiDBLite consensus disorder prediction 129 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0168 Cam-Chr10:3286195 Cam11g1917 Cam-Chr11:31605971 4.40E-47 dispersed
Cam11g0045 Cam-Chr11:2032285 Cam11g1917 Cam-Chr11:31605971 3.40E-48 dispersed
Cam11g1917 Cam-Chr11:31605971 Cam08g1372 Cam-Chr8:20042464 5.60E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1917 - - - 0.0