Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1931 ATGCTCCATCTTCTTCTTCTGCCATTCATTCTTTTAGCATCTTCTTCTGCGGCCGTTAACACCAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCTCCGTTCCCTATCCTTTCGGCATCGGCCTTGGTTGTTACATGGCCACCGGGTTTGACATAACTTGCAATTCTTCGTATGATCCTCCATTACCTTTCCTAGGTACTGGTAACCTTCAAGTTGTGGAAATTTCTCTAACTAATCTCCGCATACGCAACTTTGTTTCTTTCAATTGCTACACCCAAACTGGTGCTCTCGCCCAGAGATCCAGCTCCTGGATCAACTTGGGCCGCCTCCCTATGTTCTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCCTGGCTTTGATCAGTGGCTCCGAGGGGCTCTCCTACACCAGTGGATGCGTCTCCATCTGCTCCAGCAAGGAAAGCGTGATCAATGGCTCTTGTTCTGGCATCGGGTGTTGCCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATGATTGGGAACCTCAACAACCACACCAAAACCTGGCAGTACAATCCTTGCAGTTACGCCTTCCTGGTTGACCAAGATCGCTACAACTTCGAGGTGTCTGATCTGGCGGATCCCAACTTTCTAGCCACCATTCAAAGCTTGCCAGTGGTTTTGGATTGGGTGGTGGGTAACCTGACATGTGAAGAGGCTCGGAAAGGCTTCTCAACCTACGTTTGTCAAGCCAATTCCGAATGCTATGATTCAGAGAGTGGAAGCGGTTATCAATGTGGTTGCAGGCCAGGTTTCAGTGGGAACCCATATCTCACTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAGCAACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTCATGTCCCCACGGTTCTTATGGTGATGGTAAGAAGGACGGCAAGGGCTGCATTACCAAAACCAAGCAATTTCCACTTATTCAACTCTCTCTTGGTCTTGGCTCCACTCTTCTCTTCCTTATCGTCACAGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAATCTCATTAAACTTAGAGAGAAATTCTTCCAACAAAACGGAGGATTCTTATTGCGCCAGCAGTTATCCCAACACCAAGCTGCCGTTGACTCCACAAAAATCTTCACCGCTGAGGAGCTGGAGAAAGCGACCGACAATTATGCTGAGACCCGAATTTTGGGCAAAGGCGGAAACGGGACTGTGTACAAAGGAATTCTGCCAGACGGCAAAATAGTGGCCATTAAGAAGTCCAAGATAGCTGATGAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGGTCCAAATCAACCACAGAAATGTGGTGAAGCTCTTGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTTGTCTACGAATTCGTGTCCAATGGGACTCTACATGCCCATATTCATGACAACAACAGCTTTAATAGTAATTCTCTGTCTTGGGAAAACCGGTTGAGAATAGCGACGGAAACGGCTGCAGCTCTTTCCTACCTGCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTGAAGTCGGCGAACATATTGTTGGACAACAAATGCACTGCAAAAGTAGCCGATTTTGGAGCATCCAAGTTTATCCCAATGGATCAGTCGCAGATCACGACGTTGGTTCAAGGGACGTTTGGCTACTTAGACCCGGAGTATTTCCAAACGAGTCAATTGACGGAGAAGAGCGACGTGTACAGCTTTGGGGTGGTACTGTTAGAGTTGTTGACGGGAGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAGAGAAACCTGTCGTCGTATTTTGTAGCGTCGTTGCGTGAGAAGAGGTTGTTTAGGATACTGGAGGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCGGAGCTAGCCAGGAGATGCTTGAAGCTGAAGGGGGAAGACAGGCCCAGAATGAGAGAAGTGGTGTCGGAGTTAGAAAGGTTGAGAAGGGAAGGTGAAGGTGAAGGTGTAAATGAGGAAGAAACACAAACTTTGTTGGAACCACAACAACAACATGCCTTAAACTCACTGGATTTGTACCCCATTTCCACTTCTACTTTTCAAGCCGCCCATGTCTACAATTACGAAGCATTCGTATCCGAGTCTAGTTCTTCCCAATACCAATACGACGTCGGATCCTCCTCCTCCACATCCCATCTCGTCCATTCATTCCACCTCTCGCGATGA 2295 48.89 MLHLLLLPFILLASSSAAVNTKPGCPSNCGNVSVPYPFGIGLGCYMATGFDITCNSSYDPPLPFLGTGNLQVVEISLTNLRIRNFVSFNCYTQTGALAQRSSSWINLGRLPMFFSTTNKFTVIGCDTLALISGSEGLSYTSGCVSICSSKESVINGSCSGIGCCQTAVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDQDRYNFEVSDLADPNFLATIQSLPVVLDWVVGNLTCEEARKGFSTYVCQANSECYDSESGSGYQCGCRPGFSGNPYLTSGCQDIDECAGPSNPCEGICVNTPGSYYCSCPHGSYGDGKKDGKGCITKTKQFPLIQLSLGLGSTLLFLIVTATWLYFTIKKRNLIKLREKFFQQNGGFLLRQQLSQHQAAVDSTKIFTAEELEKATDNYAETRILGKGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILVQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHAHIHDNNSFNSNSLSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDNKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERSESQRNLSSYFVASLREKRLFRILEGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLRREGEGEGVNEEETQTLLEPQQQHALNSLDLYPISTSTFQAAHVYNYEAFVSESSSSQYQYDVGSSSSTSHLVHSFHLSR 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31700168 31702624 + CaPI482276_11g019310.1 Cam11g1931 140853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1931 764 SMART egf_5 236 283 IPR000742 -
Cam11g1931 764 SMART egf_5 287 326 IPR000742 -
Cam11g1931 764 CDD STKc_IRAK 415 684 - -
Cam11g1931 764 SMART egfca_6 284 326 IPR001881 GO:0005509(InterPro)
Cam11g1931 764 FunFam Wall-associated receptor kinase 2 485 703 - -
Cam11g1931 764 Gene3D Phosphorylase Kinase; domain 1 383 484 - -
Cam11g1931 764 FunFam Fibrillin 2 283 321 - -
Cam11g1931 764 ProSiteProfiles EGF-like domain profile. 284 317 IPR000742 -
Cam11g1931 764 Pfam Protein kinase domain 409 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1931 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam11g1931 764 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Cam11g1931 764 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1931 764 FunFam Wall-associated receptor kinase 2 379 484 - -
Cam11g1931 764 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 698 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cam11g1931 764 Pfam Wall-associated kinase 156 232 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Cam11g1931 764 Gene3D Transferase(Phosphotransferase) domain 1 485 708 - -
Cam11g1931 764 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Cam11g1931 764 SUPERFAMILY EGF/Laminin 282 326 - -
Cam11g1931 764 Pfam Wall-associated receptor kinase galacturonan-binding 25 82 IPR025287 GO:0030247(InterPro)
Cam11g1931 764 Pfam Calcium-binding EGF domain 284 325 IPR049883 -
Cam11g1931 764 ProSitePatterns Calcium-binding EGF-like domain signature. 284 308 IPR018097 GO:0005509(InterPro)
Cam11g1931 764 FunFam Wall-associated receptor kinase 2 235 282 - -
Cam11g1931 764 CDD EGF_CA 284 317 - -
Cam11g1931 764 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Cam11g1931 764 Gene3D Laminin 235 286 - -
Cam11g1931 764 SMART serkin_6 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam11g1931 764 Gene3D Laminin 287 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1117 Cam-Chr3:21618620 Cam11g1931 Cam-Chr11:31700168 2.60E-46 dispersed
Cam08g1062 Cam-Chr8:16988897 Cam11g1931 Cam-Chr11:31700168 1.60E-187 dispersed
Cam08g1063 Cam-Chr8:16995935 Cam11g1931 Cam-Chr11:31700168 4.70E-178 dispersed
Cam08g1064 Cam-Chr8:17017123 Cam11g1931 Cam-Chr11:31700168 1.20E-70 dispersed
Cam11g0777 Cam-Chr11:9756761 Cam11g1931 Cam-Chr11:31700168 9.50E-62 dispersed
Cam11g0938 Cam-Chr11:14910907 Cam11g1931 Cam-Chr11:31700168 3.00E-118 dispersed
Cam11g1931 Cam-Chr11:31700168 Cam01g2577 Cam-Chr1:37411229 5.90E-57 dispersed
Cam11g1931 Cam-Chr11:31700168 Cam04g0932 Cam-Chr4:23437721 2.90E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85607 PF00069 Pkinase 1.70E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1931 - - - 0.0