Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam11g1935 ATGGAAGAGGTTGCGGTAGAAAAAGAACACGAAGGAGAATCGGAGACCCCTCGTGTTACAGCAAGACAATTGCAAGAAGCAGTTGATGCTCATCCAGATGACCCCTCATCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGGAAGTCACGATAAGGCGGCTGCCGCGGACCATTTTCTCAAATCAGCGAAACTAGACCCTGGAAATGCTGCCGCTTTCAAATATCTTGGGCATTATTACGCCACATTTTCTGTCGACATCGAAAGGGCTCTCAAGTGCTACCAGAGAGCTGTCAGTCTCGACGTCGACGATTTCCACTCTGGAGAAGCCTTGTGCGATCTGTTGCATCACCAAGGAAAGGAGAGTTTAGAGGTTGCTGTATGCAGAGAGGCTTCCTCTAAGTCACCCAGGGCCTTCTGGGCTTTCCGGAGGTTGGGCTATTTGCAGGTTTATCAAAAGAAATGGACTGAAGCTGTCTTAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATATCAACGACTTGGTAGGTTTACTGCTGCAATTAAGTCTTATGCACGGGCCATTGAAATTGAAGGAGATAGAATTCTCGCTTGGGTTGAGAGTGGAAACATCTTCTTGATGCTTGGTTTGTTAAAAAAAGGAGTTGAACACTTTCGGCAAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTTCTTGGTTTGGCAAAGGAATACATTAATAGGGGGGCATTTAAGTGGGCATCCTTCCTATTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGCAAACTCATCGTGTATCTGGAAGTTGCTTGGAGATATTCAGCACACATATGCAAAATGTTATCCATGGATGGAAGAGGACTGGGGACAATGCTCAGAATCCTTCAGAACTTCTATCCTTTCCTGGAAGCAGACCCGCAGTTTGGCTTTATTTTCTGCCAAATGTTCCTATCAGCAAGCCCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATATTATTTCATCTTTGAATGACGATTCTGGATTTGGATTCAATTCCTGGCAGATATCTGAAAAGATGACTTTAGGAGCCTTGATGCTCGAGGGTGACAATCATGAATTTTGGGTGGCAATGGGATGCATCTCTAACCATGATGCGTTGAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTCTGGCTGGAGCCTGGGCTTATCTTGGGAAGTTATACTGGAATAGGGGCGAGAAGCAATTAGCAAGACAGGCTTTTGATTATGCTAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCTGGCATGTCGGCTGATTTGAACATTAGGGAGTCTTCATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCCAAGCTTTCTCTGCATGCAGGCCATCTTTCATCTCCACAGGTGTTCGGAGCCATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCTGAATCCTATAATCTCAATGGACTAGCTTTTGAGGCACAATTAGATTATCAATCTGCTGTTGCTGCTTATCGTTTAGCACACCTCACAATTAGCCATTTTTCAGATAGAGTTCCAAGGTCTCATGTCAGAGATATATCAATCAACTTAGCCAGATCACTCTGCATGGTTGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTGAGTAAAGAAGGCATGCTCGACATTGAAGGTTTGCAGGTTTATGCATTCTCTCTATGGAAGCTAGGAAAGAATGACGAGGCTCTTAGCACTGTGAGAACACTTGCTTCTGGTATCTCTGCCATGGAAAGCACACGTATGGCTGCGTCTGTTGGTTTCATATGCAGATTGTTGTGTTCAATATCTGGACTGGATTCCACAATTAACAGTATCATGAAGATGCCAGCCAATTTCTTCCAGAGTTCAAAAATGAGCTTTGTAGTGGCTGCTGTTCATGCTCTTGATAGTTGTGAGCGGCTTGAGTCCATTGTTTTAAGCAGTCGTTCCTGCCTCCAATCTCATGAAGAGATTACTAGAATGCACATTTTGATTACTCTTTCTAAGCTGATCAAATATCGAACAAATAACTGCCTGGGATTTCTCAATGGAGTGATGCATCTTAGAAAAGCTCTTCATGCATACCCCAACAGTAATTTGATCAGGAACTTGCTTGGTTATCTGTTGCTATCCGACGAAGAAGGGGATGACAATCACATAGCTACTAGGTGTTGCAACATGTTTTATGGTTTTGACCAACAGAACAAAGGTCTGAAATCTGCATATGAAATTCATGGTGCTGGAGCCGTGGCCTGCTATACAATTGGCACAAGTCATCCGAGGTTTTCTTTTCCAACATGTTCATACCAGTGCCAGAATGGAATTGGGACCATCCGACAACTTCAAAAATGCTTACGTCAAGAGCCATGGAATTGTGATGTTCAATATCTTCTTATACTAAACATTCTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTACGTGCAACTATTGAGCGGCTAATCTTGGTTGCCTTCTCCAATGAACCATATTTTGAGAAAGATACATCTCATCATTATAAAAAGTTTCAGCTTCTACTTTGTGCATCTGAGATCAGTTTGCAAGGCGGTGGCCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTGTTTCACTTCCTGAAATGTATCTTTTTTATGCACACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTCCGTAAAGAGTTCATAAAATGTTTGGATTTAAAGACAGATAACTATCTTGGATGGGTATGCCTTAAATTCATTGCATCTGGATATGAGCTTCATGATGAATCCAATATATTAGAACTTAGTTTCAAGAAATGCTCATTAGAGAGCAAGAATCTGCAACACATGGTAATACCTATGTCTAGTCTGGTCGATGGTTTGATATCTCTCAGGAGCCAGGATTTTATGGCTGCTGAGAAGTATTTTGCACAAGCTTGTTCTTTGGGACACGATGATGGCTGTCTCCTCCTCTGTCATGGTGTAACCTGCATGGAACTTGCAAAGCAGCTTTGCAGTTCTCATTTCTTGAGGCTGGCTGTGAACAGTCTTCTTAAAGCTCAAGTAATTTCTGTTGTTCCAATACCAATTGTCTCGATCACACTGGCACAAGCAGAAGGGAGTCTTGGTCTGAAAGAAAATTGGGAGTCAGGCCTTCGTTTTGAATGGTTCTCGTGGCCACCAGATATGAGGCCTGCGGAGCTCTTATTTCAAATGCATCTACTTGCAAAACAGTCAAAAGTTGGTTCTGATCAATTGAGGGTTGAGTTATGTCAGTCTCCTCTGAGATGGGTTCTTCGTGCAATTCATGTAAACCCTTCTTGCATGAGATATTGGAAGGTGGTGCAAAGCTTGTGGAATGAGGGCTGA 3567 42.98 MEEVAVEKEHEGESETPRVTARQLQEAVDAHPDDPSSHFKLGIFMWENGGSHDKAAAADHFLKSAKLDPGNAAAFKYLGHYYATFSVDIERALKCYQRAVSLDVDDFHSGEALCDLLHHQGKESLEVAVCREASSKSPRAFWAFRRLGYLQVYQKKWTEAVLSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLLKKGVEHFRQALEISPKSITAQFGLSSGLLGLAKEYINRGAFKWASFLLEEASKVARGSTHLAANSSCIWKLLGDIQHTYAKCYPWMEEDWGQCSESFRTSILSWKQTRSLALFSAKCSYQQALHLAPWEANIYTDIAITLDIISSLNDDSGFGFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYWNRGEKQLARQAFDYARSIDPSLALPWAGMSADLNIRESSSDEAFESCLRAAQILPVAEFQIGLAKLSLHAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQECENLSKEGMLDIEGLQVYAFSLWKLGKNDEALSTVRTLASGISAMESTRMAASVGFICRLLCSISGLDSTINSIMKMPANFFQSSKMSFVVAAVHALDSCERLESIVLSSRSCLQSHEEITRMHILITLSKLIKYRTNNCLGFLNGVMHLRKALHAYPNSNLIRNLLGYLLLSDEEGDDNHIATRCCNMFYGFDQQNKGLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCQNGIGTIRQLQKCLRQEPWNCDVQYLLILNILQKAREERFPCHLRATIERLILVAFSNEPYFEKDTSHHYKKFQLLLCASEISLQGGGQIKCINYAKAASSVSLPEMYLFYAHLLLCRAYAAENDSNNLRKEFIKCLDLKTDNYLGWVCLKFIASGYELHDESNILELSFKKCSLESKNLQHMVIPMSSLVDGLISLRSQDFMAAEKYFAQACSLGHDDGCLLLCHGVTCMELAKQLCSSHFLRLAVNSLLKAQVISVVPIPIVSITLAQAEGSLGLKENWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGSDQLRVELCQSPLRWVLRAIHVNPSCMRYWKVVQSLWNEG 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31718038 31735392 + CaPI482276_11g019350.1 Cam11g1935 140857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam11g1935 1188 Pfam Tetratricopeptide repeat 146 203 - -
Cam11g1935 1188 Gene3D Tetratricopeptide repeat domain 20 86 IPR011990 GO:0005515(InterPro)
Cam11g1935 1188 Gene3D Tetratricopeptide repeat domain 381 640 IPR011990 GO:0005515(InterPro)
Cam11g1935 1188 Gene3D Tetratricopeptide repeat domain 87 368 IPR011990 GO:0005515(InterPro)
Cam11g1935 1188 MobiDBLite consensus disorder prediction 1 34 - -
Cam11g1935 1188 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SUPERFAMILY TPR-like 525 636 IPR011990 GO:0005515(InterPro)
Cam11g1935 1188 ProSiteProfiles TPR repeat profile. 431 464 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SUPERFAMILY TPR-like 21 245 IPR011990 GO:0005515(InterPro)
Cam11g1935 1188 MobiDBLite consensus disorder prediction 1 17 - -
Cam11g1935 1188 PANTHER SUPERKILLER 3 PROTEIN-RELATED 12 1109 IPR039226 GO:0006401(InterPro)|GO:0034427(PANTHER)|GO:0055087(PANTHER)|GO:0055087(InterPro)
Cam11g1935 1188 ProSiteProfiles TPR repeat profile. 209 242 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 ProSiteProfiles TPR repeat region circular profile. 175 205 - -
Cam11g1935 1188 ProSiteProfiles Rhodanese domain profile. 99 166 IPR001763 -
Cam11g1935 1188 SUPERFAMILY TPR-like 395 561 IPR011990 GO:0005515(InterPro)
Cam11g1935 1188 SMART tpr_5 431 464 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SMART tpr_5 141 174 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SMART tpr_5 535 568 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SMART tpr_5 250 283 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SMART tpr_5 175 208 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SMART tpr_5 72 106 IPR019734 GO:0005515(InterPro)
Cam11g1935 1188 SMART tpr_5 209 242 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam11g1935 K12600 - - csv:101220693 2164.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009