Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00001 ATGCGTACGGGCGTGCGCGTGGCGGGGCTTATGCGCGCACCCGCCCCAACCATCAGCGCCGCTTTCCTCTTCCTCCCCTTATGCATAATGGTCGTCTTGTCGGCTTCCGATGCCGAAACCCTCCTTCAATTCAAGCGCTCTTTGACCTCCACCACCTCTCTTCGCAGCTGGGACCCCTCTGTTCCTCCTTGCGACAACCGCAAGGCTAACTGGGCGGGTGTGCTTTGTATGAATGGCTATATTAAGGGTCTGCGGCTTGAGAATATGGGGCTTAAGGGCGAGGTTGATGTGAATCCCCTCGTTTCTTTGACTCATTTGCGCACCCTCAGCTTCATGAACAACACCTTGGTTGGGCCTTGGCCTAGTGTTATAAGCAAACTAGGCAATCTACGATCTGTTTATCTCTCCTATAACCATTTTTCTGGAGAAATCCCAGACGATGCCTTTACTAGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAAGGGGCAAATTCCCTTATCTCTCGCTTCCGTGTCTACGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAGAGGCCAAGTTCCCCACCTTGAAATGGATACTTTGAAGAAACTTAATGTTTCCAACAATGAGTTGAGGGGCCCCATACCTAGAAGCTTAAGCCATATGGATCCTACCTGTTTTTCAGGTAACAGTGATTTGTGTGGAGATCCTCTTCCAGCATGCGAGATATCCCAGTTGTCACCCTCAGGGCTGCTGAAAATTGCGGTGATACTGATAGTTCTGGGGGTAACATTAGCAGTGACAGCTGCAATTTTCATGATTTTGGTTTTAAGGAAGCATCCAGCAGGAGGCAGTATTGAAGAGGAGAACAAGCCAGCGGAGAGTGCATACAGATCCACGCAGTCGTCGTCGGTGGCACCGGCTCCGAAGAGGGGGGCAGAGCATGGCAAACTGTTGTTCGTGAGGAATGACCGGGAGAGGTTCGACTTACAGGATCTGCTCCGAGCGTCCGCCGAAGTATTAGGGAGTGGCTCATTTGGGTCTTCCTACAAAGCAACTGTTGTTTGTGGTGCGGTGGTGGTGAAGCGATACAAGCACATGAACAACGCGGGAAGAGAGGAGTTTCATGAGTACACGAGAAGGCTAGGCAGGTTGACGCATCCAAATCTACTGCCCCTGGTTGCCTATTATTACAGGAAGGAAGAGAAGCTCTTGGTTTTCGACTTTGTAGACAACGGCAGTTTGGCAAGCCATCTGCACGGGAACCACAACTTGGAGGAGCCAGGCCTGGATTGGGGCGCCAGGTTGAAGATCATCAAAGGGATAGCAAGAGGGTTGTGTTACCTCTACACCTCCCTGCCCAACATAGCAGCACCCCATGGCCATCTCAAATCTTCAAACGTGCTGCTAGATGAGTCGTTTGAACCTCTGCTCACGGATTACGGCCTAATCCCGGTAGCCAACCTTGAGCACAGCCAAACACTGATGATGGCCTACAAATCACCGGAGTATGCGCAGTTGGGGCGCATAACCAAGAAGAGCGACGTGTGGAGCTTAGGAATTGTGATACTGGAGATGTTGACTGGTAGGTTCCCAGAGAACTACCTCACCAGAAATCATGACATCAAAGCAGACCTGGCCAGTTGGGTGAACAACATGATAAAGGAAAAGAAGACAGCACAAGTGTTCGATGCAGAGCTGGGGAGAGCCAGGGAGAGCAACAAAGGCGAACTGTTGAAGATGCTGAAGATTGGGTTGAGTTGCTGTGAGGACGATGTGGATAGAAGGTCGGACTTGAATGAGATAGTAAAACAAATTGAAGAGCTGAAGGAGGAAGAGTTGAAGGAGGAAGAGTTGAGTGATGATGGAGTTGACTTCTCCCCACACTAA 1890 49.63 MRTGVRVAGLMRAPAPTISAAFLFLPLCIMVVLSASDAETLLQFKRSLTSTTSLRSWDPSVPPCDNRKANWAGVLCMNGYIKGLRLENMGLKGEVDVNPLVSLTHLRTLSFMNNTLVGPWPSVISKLGNLRSVYLSYNHFSGEIPDDAFTSMKFLKKVFLTNNEFKGQIPLSLASVSTLMELRLDGNKFRGQVPHLEMDTLKKLNVSNNELRGPIPRSLSHMDPTCFSGNSDLCGDPLPACEISQLSPSGLLKIAVILIVLGVTLAVTAAIFMILVLRKHPAGGSIEEENKPAESAYRSTQSSSVAPAPKRGAEHGKLLFVRNDRERFDLQDLLRASAEVLGSGSFGSSYKATVVCGAVVVKRYKHMNNAGREEFHEYTRRLGRLTHPNLLPLVAYYYRKEEKLLVFDFVDNGSLASHLHGNHNLEEPGLDWGARLKIIKGIARGLCYLYTSLPNIAAPHGHLKSSNVLLDESFEPLLTDYGLIPVANLEHSQTLMMAYKSPEYAQLGRITKKSDVWSLGIVILEMLTGRFPENYLTRNHDIKADLASWVNNMIKEKKTAQVFDAELGRARESNKGELLKMLKIGLSCCEDDVDRRSDLNEIVKQIEELKEEELKEEELSDDGVDFSPH 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9182 11237 - Carg04357-RA Car01g00001 140865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00001 629 ProSiteProfiles Protein kinase domain profile. 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00001 629 Pfam Protein tyrosine and serine/threonine kinase 339 606 IPR001245 GO:0004672|GO:0006468
Car01g00001 629 MobiDBLite consensus disorder prediction 285 310 - -
Car01g00001 629 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Car01g00001 629 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515
Car01g00001 629 Coils Coil 596 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00001 Car-Chr1:9182 Car11g00304 Car-Chr11:1662825 0 dispersed
Car08g00985 Car-Chr8:6610544 Car01g00001 Car-Chr1:9182 0 transposed
Car01g00001 Car-Chr1:9182 Car12g01296 Car-Chr12:11984585 2.03E-148 wgd
Car01g00001 Car-Chr1:9182 Car05g01346 Car-Chr5:12132090 3.14E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88568 PF07714 PK_Tyr_Ser-Thr 2.70E-28 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00001 - - cmo:103487533 954.51