Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00006 ATGGAGCCCTACCATGAAGTTTCAGAAATGCCAGAGCAGATTATACTACGCTGGGACTCTGCCGCGCCGGATGAAGTGAAGGATAACATGATTTTTGACTCCGACAGGGAAGAGATCGACCGATACTTGCGGGCCGTCGATGAAATCCAGAGGTCGATGTCGTCGGCTTCGATATTGGACGATCAGAACAAAGTCGACTCCACTATGCAGATTGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTCTGTCCACTCATACCATTCCGATCGAGGTCGAGTCGCTTACTGATCCGTCTCCATCTGCTTGCTCCATGTCCAGTTGTACGAGTGGTGTCTTCGAGGACGTGAACGACGTCGAAGCGGATTCGCAGGAAGTTCACCTCGATTTAAGTGGTAGTCCAAGTTTTGGGTCAAGTGGACGATCGAGCTATCGGAGGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGAGGCGATTATCGATCTACGGAGTATTGCTGAGAGGATGATAGCGGCAGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCAAACGCCTCGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGTGACGAAGATCAGAAGGTGGATCAGAGCGGCAAAGATTTCCGTTCGGACTCTGTTTTCCAGCGAGAAGAGGCTCTGCCAGCATATCTTCTATGGCATAGGGACCGGCATAGAGGATGCTTGTTTCATGGAGACTGTTAAAGGTCCTGTGACTCAATTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTAACAGATTTGATACCTGACATTGATGTTATATTCGAATCAAAATCGGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTCGCGGCTGGGGGAGGCCGTCAGAGGAACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCTGGGCGGGACGGTTCATCCGTTGACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGAATACCAAGTGGCCTTAGAGGAGCTCATCGTGTCCAAACCGTCGACGGGCTCGAGGAACTCGGCAGATATGGATGAGTTTTCGGAGGTAGAGGGGAAAACCCCGCTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTGAATTTGGAGGGAAAATCCAGGCAGTACAAAGACCCTTCTCTAGCTCATTTCTTTATCATGAACAACGTTCATTACATTGTTGAGAAGATAAGAGGATCCCCGGAATTGCGAGACATGATTGGAGAGGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGCGAACAACGTGGGTAAATGTGGTGTACTGCCTGCGGAACGAAGGGTTGAATGCGGGGGGAAGCTTGTCTTCTGCCCCCTCAAAGAGCGCTATTAGAGAGAGAATGAAGAGTTTCAACGCCATGTTTGAGGAGGTTCACAGGACGCAGTCGGCATGGTTGATCCCAGATCCTCTGCTGAAGGAGGAGCTTCGCATATCCATAACCGAGAAGTTGATCCCCGCTTACAGGTCGTTTCTTGGCCTCCATGGTCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTTGAGGAACTGGAAAATGGCATCCTGGATTTCTTTGAGGGCTGCTCGAACAAAACCGAGTTTTGTTTTCTTGGCGACAAAGCTTCGGCTTTCTTTACATCGCTCCTCCTGTTTACACACATTTCACTCGAGCAAGAAGAATCGGAAGAGGTGAAGCGGAGGTGGATACGATCGTCACATCACAATTTTCTCACCCGAAGCTCGTCTTTTTCAAAATATGCATTTAAGGCTGTCAAGGCTGCTGGAATTACTTCTATTGGCGTTCGCGGTAAAGATTCAGTTTGTGTTGTGACCCAAAACAAGGTTCCGGACAAGCTTCTGGATCAATCAAGTGTCTCACATCTTTTCCCTATCACAAAGTACCTAGGGTTGTTAGCAACAGGCGTGACAGCTGATGCCAGAACATTGGTTCAGCAAGCAAAGAATGAAGCAGCAGAGATTCGTTTTAGATATGGATATGAGATGCCGAACCATCCGGAGTTCACCTATGAAGAAACAGTACAGGAGGATGTGCTTTCTTTGAAACTTCACATGATACTAATGCATAGAAAAGCCCAACACTATAATGAGATAGTCTCGTTCCTTGCTGGGAAATGCAGCAATAAAGGGGTAGGATTGGGTGACAGCAAATTAGATGCATCAATCATTGACTTGTGTTCGGAAATCTCTGCGACCACTATCACAGAACCAATAGCGGCGATAGCAGCGCCAGTCCCGGAAAATCCTGCGGCGGCAATGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGTGAGTGTTGTGGGCTGTCGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGCCGATTCGACGGAAAATGGATTTGCGGCCTGTGTTCGGAGGCAGTTCAAGACGAGATTCTCAAGTCCGACGTCGTACTAATCACCACCGAGGAAGCCATGGCCAAGCACATGAGCTTCTGCAAGAAATTCACCGCCACCGCAGGGCCACCTCCGGACCCGACGCCCCATCTCATAACGGCAATGAGACAGATCCTCCGCCGCAGTTTAGACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCGGCGCAGACAAAATACGCGGCCGGGTTCTTGGTTGA 2862 49.65 MEPYHEVSEMPEQIILRWDSAAPDEVKDNMIFDSDREEIDRYLRAVDEIQRSMSSASILDDQNKVDSTMQIAMARLEDEFRHILSTHTIPIEVESLTDPSPSACSMSSCTSGVFEDVNDVEADSQEVHLDLSGSPSFGSSGRSSYRRTSSIREIDLIPSEAIIDLRSIAERMIAAGYLRECIQVYGSVRKSTFDSSFKRLGIEKLSIGDIQRLDWNELVTKIRRWIRAAKISVRTLFSSEKRLCQHIFYGIGTGIEDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILSRLGEAVRGTLSEFENAVLREPSLHPVLGGTVHPLTRYVMNYVSLISEYQVALEELIVSKPSTGSRNSADMDEFSEVEGKTPLALHLIWSIVILQLNLEGKSRQYKDPSLAHFFIMNNVHYIVEKIRGSPELRDMIGEVYLKRMTGKYRQAATNYERTTWVNVVYCLRNEGLNAGGSLSSAPSKSAIRERMKSFNAMFEEVHRTQSAWLIPDPLLKEELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENGILDFFEGCSNKTEFCFLGDKASAFFTSLLLFTHISLEQEESEEVKRRWIRSSHHNFLTRSSSFSKYAFKAVKAAGITSIGVRGKDSVCVVTQNKVPDKLLDQSSVSHLFPITKYLGLLATGVTADARTLVQQAKNEAAEIRFRYGYEMPNHPEFTYEETVQEDVLSLKLHMILMHRKAQHYNEIVSFLAGKCSNKGVGLGDSKLDASIIDLCSEISATTITEPIAAIAAPVPENPAAAMLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEAMAKHMSFCKKFTATAGPPPDPTPHLITAMRQILRRSLDSPRALRSKRTSRTSGADKIRGRVLG 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39557 45661 - Carg04352-RA Car01g00006 140870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00006 953 MobiDBLite consensus disorder prediction 929 944 - -
Car01g00006 953 Pfam Proteasome subunit 662 738 IPR001353 GO:0005839|GO:0051603
Car01g00006 953 Pfam Protein of unknown function (DUF1677) 837 925 IPR012876 -
Car01g00006 953 MobiDBLite consensus disorder prediction 929 953 - -
Car01g00006 953 Pfam Exo70 exocyst complex subunit 224 589 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00006 Car14g01052 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00006 Car-Chr1:39557 Car13g00651 Car-Chr13:8066683 6.93E-151 dispersed
Car06g01208 Car-Chr6:8804968 Car01g00006 Car-Chr1:39557 2.19E-24 dispersed
Car08g00686 Car-Chr8:4408777 Car01g00006 Car-Chr1:39557 9.65E-43 dispersed
Car08g00688 Car-Chr8:4412470 Car01g00006 Car-Chr1:39557 9.52E-45 dispersed
Car09g00323 Car-Chr9:1788293 Car01g00006 Car-Chr1:39557 3.47E-34 dispersed
Car09g00556 Car-Chr9:3148314 Car01g00006 Car-Chr1:39557 5.20E-19 dispersed
Car10g00696 Car-Chr10:3602982 Car01g00006 Car-Chr1:39557 2.44E-31 dispersed
Car14g01550 Car-Chr14:12729401 Car01g00006 Car-Chr1:39557 8.10E-28 dispersed
Car17g00642 Car-Chr17:5992550 Car01g00006 Car-Chr1:39557 2.00E-44 dispersed
Car17g00643 Car-Chr17:5999243 Car01g00006 Car-Chr1:39557 2.47E-41 dispersed
Car14g01052 Car-Chr14:9233012 Car01g00006 Car-Chr1:39557 0 transposed
Car01g00006 Car-Chr1:39557 Car11g00617 Car-Chr11:3358090 4.02E-33 wgd
Car01g00006 Car-Chr1:39557 Car14g01050 Car-Chr14:9219695 6.51E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00006 K07195 - csv:101204229 980.704