Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00006 ATGGAGCCCTACCATGAAGTTTCAGAAATGCCAGAGCAGATTATACTACGCTGGGACTCTGCCGCGCCGGATGAAGTGAAGGATAACATGATTTTTGACTCCGACAGGGAAGAGATCGACCGATACTTGCGGGCCGTCGATGAAATCCAGAGGTCGATGTCGTCGGCTTCGATATTGGACGATCAGAACAAAGTCGACTCCACTATGCAGATTGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTCTGTCCACTCATACCATTCCGATCGAGGTCGAGTCGCTTACTGATCCGTCTCCATCTGCTTGCTCCATGTCCAGTTGTACGAGTGGTGTCTTCGAGGACGTGAACGACGTCGAAGCGGATTCGCAGGAAGTTCACCTCGATTTAAGTGGTAGTCCAAGTTTTGGGTCAAGTGGACGATCGAGCTATCGGAGGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGAGGCGATTATCGATCTACGGAGTATTGCTGAGAGGATGATAGCGGCAGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCAAACGCCTCGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGTGACGAAGATCAGAAGGTGGATCAGAGCGGCAAAGATTTCCGTTCGGACTCTGTTTTCCAGCGAGAAGAGGCTCTGCCAGCATATCTTCTATGGCATAGGGACCGGCATAGAGGATGCTTGTTTCATGGAGACTGTTAAAGGTCCTGTGACTCAATTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTAACAGATTTGATACCTGACATTGATGTTATATTCGAATCAAAATCGGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTCGCGGCTGGGGGAGGCCGTCAGAGGAACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCTGGGCGGGACGGTTCATCCGTTGACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGAATACCAAGTGGCCTTAGAGGAGCTCATCGTGTCCAAACCGTCGACGGGCTCGAGGAACTCGGCAGATATGGATGAGTTTTCGGAGGTAGAGGGGAAAACCCCGCTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTGAATTTGGAGGGAAAATCCAGGCAGTACAAAGACCCTTCTCTAGCTCATTTCTTTATCATGAACAACGTTCATTACATTGTTGAGAAGATAAGAGGATCCCCGGAATTGCGAGACATGATTGGAGAGGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGCGAACAACGTGGGTAAATGTGGTGTACTGCCTGCGGAACGAAGGGTTGAATGCGGGGGGAAGCTTGTCTTCTGCCCCCTCAAAGAGCGCTATTAGAGAGAGAATGAAGAGTTTCAACGCCATGTTTGAGGAGGTTCACAGGACGCAGTCGGCATGGTTGATCCCAGATCCTCTGCTGAAGGAGGAGCTTCGCATATCCATAACCGAGAAGTTGATCCCCGCTTACAGGTCGTTTCTTGGCCTCCATGGTCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTTGAGGAACTGGAAAATGGCATCCTGGATTTCTTTGAGGGCTGCTCGAACAAAACCGAGTTTTGTTTTCTTGGCGACAAAGCTTCGGCTTTCTTTACATCGCTCCTCCTGTTTACACACATTTCACTCGAGCAAGAAGAATCGGAAGAGGTGAAGCGGAGGTGGATACGATCGTCACATCACAATTTTCTCACCCGAAGCTCGTCTTTTTCAAAATATGCATTTAAGGCTGTCAAGGCTGCTGGAATTACTTCTATTGGCGTTCGCGGTAAAGATTCAGTTTGTGTTGTGACCCAAAACAAGGTTCCGGACAAGCTTCTGGATCAATCAAGTGTCTCACATCTTTTCCCTATCACAAAGTACCTAGGGTTGTTAGCAACAGGCGTGACAGCTGATGCCAGAACATTGGTTCAGCAAGCAAAGAATGAAGCAGCAGAGATTCGTTTTAGATATGGATATGAGATGCCGAACCATCCGGAGTTCACCTATGAAGAAACAGTACAGGAGGATGTGCTTTCTTTGAAACTTCACATGATACTAATGCATAGAAAAGCCCAACACTATAATGAGATAGTCTCGTTCCTTGCTGGGAAATGCAGCAATAAAGGGGTAGGATTGGGTGACAGCAAATTAGATGCATCAATCATTGACTTGTGTTCGGAAATCTCTGCGACCACTATCACAGAACCAATAGCGGCGATAGCAGCGCCAGTCCCGGAAAATCCTGCGGCGGCAATGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGTGAGTGTTGTGGGCTGTCGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGCCGATTCGACGGAAAATGGATTTGCGGCCTGTGTTCGGAGGCAGTTCAAGACGAGATTCTCAAGTCCGACGTCGTACTAATCACCACCGAGGAAGCCATGGCCAAGCACATGAGCTTCTGCAAGAAATTCACCGCCACCGCAGGGCCACCTCCGGACCCGACGCCCCATCTCATAACGGCAATGAGACAGATCCTCCGCCGCAGTTTAGACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCGGCGCAGACAAAATACGCGGCCGGGTTCTTGGTTGA 2862 49.65 MEPYHEVSEMPEQIILRWDSAAPDEVKDNMIFDSDREEIDRYLRAVDEIQRSMSSASILDDQNKVDSTMQIAMARLEDEFRHILSTHTIPIEVESLTDPSPSACSMSSCTSGVFEDVNDVEADSQEVHLDLSGSPSFGSSGRSSYRRTSSIREIDLIPSEAIIDLRSIAERMIAAGYLRECIQVYGSVRKSTFDSSFKRLGIEKLSIGDIQRLDWNELVTKIRRWIRAAKISVRTLFSSEKRLCQHIFYGIGTGIEDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILSRLGEAVRGTLSEFENAVLREPSLHPVLGGTVHPLTRYVMNYVSLISEYQVALEELIVSKPSTGSRNSADMDEFSEVEGKTPLALHLIWSIVILQLNLEGKSRQYKDPSLAHFFIMNNVHYIVEKIRGSPELRDMIGEVYLKRMTGKYRQAATNYERTTWVNVVYCLRNEGLNAGGSLSSAPSKSAIRERMKSFNAMFEEVHRTQSAWLIPDPLLKEELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENGILDFFEGCSNKTEFCFLGDKASAFFTSLLLFTHISLEQEESEEVKRRWIRSSHHNFLTRSSSFSKYAFKAVKAAGITSIGVRGKDSVCVVTQNKVPDKLLDQSSVSHLFPITKYLGLLATGVTADARTLVQQAKNEAAEIRFRYGYEMPNHPEFTYEETVQEDVLSLKLHMILMHRKAQHYNEIVSFLAGKCSNKGVGLGDSKLDASIIDLCSEISATTITEPIAAIAAPVPENPAAAMLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEAMAKHMSFCKKFTATAGPPPDPTPHLITAMRQILRRSLDSPRALRSKRTSRTSGADKIRGRVLG 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39557 45661 - Carg04352-RA Car01g00006 140870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00006 953 MobiDBLite consensus disorder prediction 929 944 - -
Car01g00006 953 Pfam Proteasome subunit 662 738 IPR001353 GO:0005839|GO:0051603
Car01g00006 953 Pfam Protein of unknown function (DUF1677) 837 925 IPR012876 -
Car01g00006 953 MobiDBLite consensus disorder prediction 929 953 - -
Car01g00006 953 Pfam Exo70 exocyst complex subunit 224 589 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00006 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101204229 980.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00006 Car14g01052 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00006 Car-Chr1:39557 Car13g00651 Car-Chr13:8066683 6.93E-151 dispersed
Car06g01208 Car-Chr6:8804968 Car01g00006 Car-Chr1:39557 2.19E-24 dispersed
Car08g00686 Car-Chr8:4408777 Car01g00006 Car-Chr1:39557 9.65E-43 dispersed
Car08g00688 Car-Chr8:4412470 Car01g00006 Car-Chr1:39557 9.52E-45 dispersed
Car09g00323 Car-Chr9:1788293 Car01g00006 Car-Chr1:39557 3.47E-34 dispersed
Car09g00556 Car-Chr9:3148314 Car01g00006 Car-Chr1:39557 5.20E-19 dispersed
Car10g00696 Car-Chr10:3602982 Car01g00006 Car-Chr1:39557 2.44E-31 dispersed
Car14g01550 Car-Chr14:12729401 Car01g00006 Car-Chr1:39557 8.10E-28 dispersed
Car17g00642 Car-Chr17:5992550 Car01g00006 Car-Chr1:39557 2.00E-44 dispersed
Car17g00643 Car-Chr17:5999243 Car01g00006 Car-Chr1:39557 2.47E-41 dispersed
Car14g01052 Car-Chr14:9233012 Car01g00006 Car-Chr1:39557 0 transposed
Car01g00006 Car-Chr1:39557 Car11g00617 Car-Chr11:3358090 4.02E-33 wgd
Car01g00006 Car-Chr1:39557 Car14g01050 Car-Chr14:9219695 6.51E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g67 Blo05g00033 Blo06g00756 Bda04g00941 Bda10g00882 Bpe06g00808 Bpe10g00709 . . . . Cma01g00010 . Car01g00006 Car14g01052 . . . Bhi01g02900 . . Lac12g2533 . . . . . . . . . . Cone20ag1348 Cone17ag0057 . . . . . . . . . . . . Bma09g00990 Bma15g00313 . Cmo01g00011 . . . . . . . . . . . . . . . . . . . . . . Csa03g02774 . Cme04g01362
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g00872 CST 10 653 EXO70 exocyst subunit family AT5G03540 76.6 5.9e-286 980.3
Car04g01504 CST 10 651 EXO70 exocyst subunit family AT5G03540 74.9 1.7e-277 952.2
Car07g00813 CST 1 639 EXO70 exocyst subunit family AT5G03540 68.3 4.6e-254 874.4
Car03g01010 CST 1 616 EXO70 exocyst subunit family AT5G03540 67.5 7.6e-241 830.5
Car07g00813 CST 1 639 EXO70 exocyst subunit family AT5G52340 75.3 1.3e-282 969.1
Car18g00872 CST 12 653 EXO70 exocyst subunit family AT5G52340 73.8 2.5e-270 928.3
Car04g01504 CST 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.7e-269 925.6
Car03g01010 CST 1 597 EXO70 exocyst subunit family AT5G52340 76.0 1.2e-264 909.4
Car07g00813 CST 145 632 EXO70 exocyst subunit family AT5G52350 61.3 1.2e-168 590.5
Car04g01504 CST 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.2e-166 582.0
Car18g00872 CST 147 653 EXO70 exocyst subunit family AT5G52350 58.9 2.7e-165 579.3
Car03g01010 CST 145 597 EXO70 exocyst subunit family AT5G52350 60.9 1.4e-153 540.4
Car01g00642 CST 1 624 EXO70 exocyst subunit family AT5G58430 65.4 4.6e-240 827.8
Car13g00010 CST 1 626 EXO70 exocyst subunit family AT5G58430 64.9 4.6e-240 827.8
Car13g00010 CST 1 625 EXO70 exocyst subunit family AT1G07000 51.7 3.6e-173 605.5
Car01g00642 CST 1 623 EXO70 exocyst subunit family AT1G07000 51.3 2.3e-172 602.8
Car06g01419 . 58 671 EXO70 exocyst subunit family AT5G13150 51.8 7.6e-169 591.3
Car14g01275 . 61 675 EXO70 exocyst subunit family AT5G13150 50.3 7.1e-167 584.7
Car04g02200 . 79 675 EXO70 exocyst subunit family AT5G13990 54.6 7.3e-186 647.9
Car15g00706 . 87 693 EXO70 exocyst subunit family AT5G13990 53.0 1.2e-183 640.6
Car14g01052 CST 12 611 EXO70 exocyst subunit family AT1G72470 64.1 1.7e-213 739.6
Car01g00006 CST 12 596 EXO70 exocyst subunit family AT1G72470 62.2 1.6e-200 696.4
Car14g01052 CST 12 609 EXO70 exocyst subunit family AT1G54090 62.1 2.7e-208 722.2
Car01g00006 CST 9 594 EXO70 exocyst subunit family AT1G54090 59.7 1.9e-193 672.9
Car14g01052 CST 9 610 EXO70 exocyst subunit family AT3G14090 63.4 2.5e-217 752.3
Car01g00006 CST 9 594 EXO70 exocyst subunit family AT3G14090 61.3 2.9e-202 702.2
Car11g00032 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 63.1 4.5e-228 788.1
Car10g00053 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 62.2 3.8e-227 785.0
Car13g00651 CCT,CST 19 657 EXO70 exocyst subunit family AT5G50380 62.1 8.4e-227 783.9
Car18g00228 CCT,CST 22 661 EXO70 exocyst subunit family AT5G50380 62.8 8.4e-227 783.9
Car12g00281 . 17 684 EXO70 exocyst subunit family AT4G31540 73.4 4.0e-293 1004.2
Car05g00564 . 13 682 EXO70 exocyst subunit family AT4G31540 73.5 3.4e-292 1001.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022053 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00006 Car_Chr01 FPKM 16.905226 18.595968 16.572929 17.959637 20.810715 18.136562 20.732975 11.683615 11.684604 13.497579