Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00013 ATGCTTCATTCCATAGGAGCTGCGAGACAAACTTGTAGCTTACTTGCTGTTACCTGTGGAAGATTGCCTAAAGTAAAATGCGAGGAGGATGTTGCCGAGCATAATCTGAAATACCCCTTTCCAGAATTGGTCTCTTCCGGACGATTGGAGGTCCAAGTTCTAACAAATCCAAGCACGAATGAGTTCGGTAGAATTGTCGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAGCAACTTGAGAATGACGAACTTGGGTCGTTGGTTTGGAATGGTGTTGATTTATCTCTTGAAGATTTAAGTGGACTATTCGATACTGCATTACCAACCACCGTGTACTTAGAACTCCCAAATGGAGGCATAATAGCGGAGACCCTTCATTCTAAGGGAATTCCTTATGTCATATATTGGAACAACACATTTTCATGTTATGCTGCTGCTCATTTCCGCAATGCATTACTTTCCGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGAAATTATGCTCTTCCTGGGAATGCTGACGATTTTAGGAGTGATCTAGAGCCTCAACTTATTGGAGAACCTCCAAAGATTAACGTAGAACCGCCTGAGCTAGATGCTGGTGAAGATGAAGATGCTTCTTTAGAAGCCCTCCCTGTTATAAGTGTACATGATAATAATGTGACAATGAGACTTCTCATCTGTGGATTGCCTTGCACACCGGATGCGTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAATATTGAAGAGTTGACCAATGACATTCTTTATATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGCGGCGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCGGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGCTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTGGTTCATGTCATGCATGATTGTGAGGGCAACAAACATCACATGCACAAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTTGAGGTTTCGATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCACATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGATTTCCTGTTGCTTCCTTTGAGAAAGAGGATGCCGAGCGGTTGCTCTTCTTTTGTTCAAGGGACGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTACTGCCACACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGTCAAGGAATGAGGAATACTCTCTCTCATGACAGTCTCGCATATGCAAATATCCCTTCAGTTAGAAGAGTAGGTAGAGAGGAGCCTGCCCCAATGAATGGGTTTAAGGCACCCTTACTCCCGGCTAGGAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACTTGTGCATAGGAATAAAATGAAACTTTTCTCTGGATGGACTGAAGGAGATGGTAATAGTGGAGGCCAGCCCAAGGCTAGTTTGCCCGCGGTTACCCCGTCCAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCATTTTCAAGCTCATCTCAGTCTAAGCAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGCTGTGGAAGAAATCCAGTTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCGTACTCAATGGGAAGCGTCTTGACCTTTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGTTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGTTGCCTTTTGTGTCACAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGGTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACATAGTGTAGCAAACGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2370 43.88 MLHSIGAARQTCSLLAVTCGRLPKVKCEEDVAEHNLKYPFPELVSSGRLEVQVLTNPSTNEFGRIVESCQPSFVYLQGEQLENDELGSLVWNGVDLSLEDLSGLFDTALPTTVYLELPNGGIIAETLHSKGIPYVIYWNNTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGRNYALPGNADDFRSDLEPQLIGEPPKINVEPPELDAGEDEDASLEALPVISVHDNNVTMRLLICGLPCTPDACLLRSLEDGLNALLNIEELTNDILYIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHVMHDCEGNKHHMHKPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSHRSLVALGIGGVQGFPVASFEKEDAERLLFFCSRDENDKHSDQLLVSVLPHWFKPPTPSRKRVEPSQGMRNTLSHDSLAYANIPSVRRVGREEPAPMNGFKAPLLPARKRLKVATMRPIPLVHRNKMKLFSGWTEGDGNSGGQPKASLPAVTPSKHVTVGSTSATQRKSFSSSSQSKQQIIPLNPLPLKKHGCGRNPVQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYGCPHCSITTYKKKPHSVANGSPQGITNPRIP 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69254 74386 + Carg04345-RA Car01g00013 140877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00013 789 ProSiteProfiles ARID domain profile. 603 707 IPR001606 GO:0003677
Car01g00013 789 MobiDBLite consensus disorder prediction 557 581 - -
Car01g00013 789 MobiDBLite consensus disorder prediction 536 581 - -
Car01g00013 789 Pfam ARID/BRIGHT DNA binding domain 606 703 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00013 - - - csv:101215769 1377.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00013 Car-Chr1:69254 Car17g00618 Car-Chr17:5813252 0 dispersed
Car01g00013 Car-Chr1:69254 Car14g01069 Car-Chr14:9464085 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00085 . 1 326 ARID Transcription Factor Family AT1G04880 53.0 9.5e-94 341.3
Car08g00902 . 45 344 ARID Transcription Factor Family AT1G04880 52.0 7.8e-80 295.0
Car16g01214 . 163 432 ARID Transcription Factor Family AT1G20910 59.6 1.5e-87 320.5
Car06g00146 . 206 483 ARID Transcription Factor Family AT1G20910 54.2 4.6e-76 282.3
Car09g00069 CCT 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.1e-113 407.1
Car01g01565 CCT 16 326 ARID Transcription Factor Family AT1G76110 63.9 2.4e-110 396.0
Car16g01214 . 154 462 ARID Transcription Factor Family AT1G76510 61.0 4.7e-106 382.1
Car06g00146 . 197 513 ARID Transcription Factor Family AT1G76510 56.8 1.3e-95 347.4
Car01g01610 . 5 218 ARID Transcription Factor Family AT1G76510 51.5 3.1e-73 273.1
Car14g01069 CCT,ECH 1 781 ARID Transcription Factor Family AT3G43240 58.3 6.3e-260 894.0
Car01g00013 . 1 778 ARID Transcription Factor Family AT3G43240 58.7 1.0e-257 886.7
Car17g00618 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.7 4.0e-254 874.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2763 PF01388 ARID 4.00E-14 CL0123 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00013 Car_Chr01 FPKM 21.21319 23.148479 37.487427 37.316353 59.591808 60.530533 63.375175 69.828072 66.772697 67.15593