Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00018 ATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTCATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCTATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTAAATGCCATGTTTACTAGTTTAAACTCGCCTCCAATTCTAACCCTATGGACTGCAAGTGGTGGAGATCCGTGTGGTCAGCTTTGGAAAGCCGTTACTTGCTCGGGCTCACGGGTCACAGAAATTTCACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAGTTAATCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGTAATAACTTCAGTGGAAGCCTTCCCTATTCTATTTCTCAAATGAGTTTGCTTATATCCTTGAACATCAGCCACAATCAGCTTCGAGATCAAGTCAACAATATGTTCTGGAATCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACTCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAGTTCAGTGGCACTATAGATGTTCTTGCAAATCTTCCTCTCCAAAACTTGAATGTCGAAAACAACAATTTTACTGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGTACATCTCCAGCCTACCACAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGATGGAAATAGCAGTAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTCTTCTAGTTGTGGGAGCAGTGGTAGCATATCTCTTTGTAAAGAGAAGGCCCAAGAAGTCATCCACAGACATAGAGAAGCTAAAGCTTGGGAACCAGCTTAGCGTATCTACTGCTTCAAATGCAGCGCAAGATTCATTGGCAGAAATGAAGCTTATTCATACTTCATCCTCATTTGATACAAAAGCATTGGATTCTCCTGCTTCAATCAATCTAAGACCCCCACCTATGGACAGTCATAAATCGTTTGATGACAATGATACATCAACGATACCTGCTGCGAAGAAGACCAATGTCGCTCCTGAGATAAGTGTGAAGTCATATTCAATAGCAGATCTGCAATTGGCTACAGGCAGTTTCAATGTAGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTTTCGGGCTCAGTTTGACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAGTTTTTGGAAGATTTCACAGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACAGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTTTATGAGTTCCATAAGAATGGCTCACTTCATGACTTCTTGCATATATCAGATGAATATAGCAAGCCACTAACTTGGAACTCACGTGTCAAGATTGCTCTGGGAACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCAGTGGTACACAGAAATATAAAGTCGGCTAATATCTTAATGGATGCCGAACTTAATCCTCATCTTTCCGATTGTGGCCTGGCTAGCTTTATTACCAACCTTGATCATGCATTAGATCAGCAAGCAGGATCTGGATATAGTGCCCCGGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACATATACAGCTTTGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCGTTTGATAGTTCTAGGCCACGAGCTGAGCAATCCTTGGTTCGATGGGCAATGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGTCTTTACCCAGTCAAGTCTCTCTCAAGATTTGCAGATGTTGTGGCTCTCTGCGTCCAGCCTGAGCCGGAATTCAGACCTCCTATGTCAGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGCAATCACGGATCATCTTTTAGAACTGATGAACCTGATGCACATGAGACAAGTTAA 2181 43.56 MVKKWSWGEALLLINICILGWRASFIYGATDPGDVSALNAMFTSLNSPPILTLWTASGGDPCGQLWKAVTCSGSRVTEISLSGLGLSGSLGYQLSSLTSLVNLDVSINNLGPDIPYQLPQNLQKLNLGCNNFSGSLPYSISQMSLLISLNISHNQLRDQVNNMFWNLSSLSMLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQDGGNSWSYGLAPPPPPGTSPAYHNYRYHKPGNNYSPLSSGAADGNSSRSGISGGAIAGILISLLVVGAVVAYLFVKRRPKKSSTDIEKLKLGNQLSVSTASNAAQDSLAEMKLIHTSSSFDTKALDSPASINLRPPPMDSHKSFDDNDTSTIPAAKKTNVAPEISVKSYSIADLQLATGSFNVENLLGEGSFGRVFRAQFDDGKVLAVKKIDSAAFPREFLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILMDAELNPHLSDCGLASFITNLDHALDQQAGSGYSAPEVTMSGQYTLKSDIYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWAMPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSNHGSSFRTDEPDAHETS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 92178 104346 - Carg04340-RA Car01g00018 140882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00018 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00018 726 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Car01g00018 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524
Car01g00018 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672|GO:0006468
Car01g00018 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Car01g00018 726 MobiDBLite consensus disorder prediction 704 726 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00018 Car17g00608 CCT
Car01g00018 Car08g00721 CCT
Car01g00018 Car14g01082 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00018 Car-Chr1:92178 Car08g00721 Car-Chr8:4628073 0 dispersed
Car11g01549 Car-Chr11:12382664 Car01g00018 Car-Chr1:92178 9.16E-165 dispersed
Car13g00311 Car-Chr13:5657182 Car01g00018 Car-Chr1:92178 9.52E-168 dispersed
Car04g01906 Car-Chr4:11252302 Car01g00018 Car-Chr1:92178 1.12E-65 transposed
Car14g01082 Car-Chr14:9516086 Car01g00018 Car-Chr1:92178 0 transposed
Car01g00018 Car-Chr1:92178 Car14g01081 Car-Chr14:9513853 2.46E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88569 PF07714 PK_Tyr_Ser-Thr 2.70E-41 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00018 - - csv:101208239 1228.77