Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00020 ATGAGACCCCTTCAGCCGCCGCAGGGTGTAAATCCGGCCACCGATCGTCCTCGTCGCCGCCCGAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCTGTTCCCCTCCCTTTGCCTCCGACGTCTTCTAACGCCGCTCCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGTCCACCGGAGCCTCAGCCACAGCCTCAGCCGCAGAAGCATCAGGTTTTCAGCCTCGCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGCACCGTCTACAAAGTGATTCACCGTCCCACCGGCCGCGTCTATGCTCTGAAGGTCATTTATGGAAACCACGAGGACGCGGTTAGGCTTCAGATGTGCCGTGAGGTTGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTCCTTGAATACATGGATCGAGGCTCCCTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCTTATCTCCATAGCCGCCGCATCGTACATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCCGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGTTTTGGGGTTAGCATATTGGAATTCTACCTCGGACGGTTTCCTCTTGCCGTGGAGAGGCCTGGGGACTGGGCGAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACCGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCACTACTGGAACATGCGTTCATAGCGGGGAAAAATGGAGCGGCGAGTCAGTACCAGAATCAGCAAACTCATCACCAGAATCTTCGTCAACTATTACCTCCGCCGCCCCTTCGTCCTTCCAGCCTTTCTTGA 1122 54.9 MRPLQPPQGVNPATDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNAAPPPSTSQLHNGNRPPEPQPQPQPQKHQVFSLADFERVSRIGSGCGGTVYKVIHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFIAGKNGAASQYQNQQTHHQNLRQLLPPPPLRPSSLS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 111520 112641 - Carg04338-RA Car01g00020 140884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00020 373 MobiDBLite consensus disorder prediction 348 373 - -
Car01g00020 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Car01g00020 373 Pfam Protein kinase domain 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00020 373 MobiDBLite consensus disorder prediction 1 76 - -
Car01g00020 373 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Car01g00020 373 ProSiteProfiles Protein kinase domain profile. 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00020 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00020 Car-Chr1:111520 Car18g00075 Car-Chr18:394422 1.69E-96 dispersed
Car01g00020 Car-Chr1:111520 Car12g01289 Car-Chr12:11950390 2.94E-59 wgd
Car01g00020 Car-Chr1:111520 Car14g01085 Car-Chr14:9531660 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car10g00666 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 5.8e-136 481.1
Car11g00592 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 68.4 1.1e-131 466.8
Car12g01289 . 52 376 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.9e-127 452.2
Car05g01287 CST 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.0 1.1e-107 387.1
Car10g00666 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 1.2e-133 473.4
Car11g00592 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 67.5 1.2e-130 463.4
Car12g01289 . 26 350 MAP Kinase Kinase Gene Family AT4G29810 63.1 8.7e-116 414.1
Car05g01287 CST 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 1.6e-109 393.3
Car14g00608 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 80.1 2.1e-230 795.4
Car14g01085 . 1 365 MAP Kinase Kinase Gene Family AT1G51660 67.7 3.2e-132 468.8
Car01g00020 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 69.2 5.9e-126 448.0
Car18g00075 . 31 308 MAP Kinase Kinase Gene Family AT1G51660 54.3 4.0e-82 302.4
Car14g01085 . 1 365 MAP Kinase Kinase Gene Family AT3G21220 64.8 1.1e-129 460.3
Car01g00020 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.0 5.0e-127 451.4
Car18g00075 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 54.8 2.2e-82 303.1
Car05g01287 CST 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.4 1.7e-170 595.9
Car12g01246 CST 1 422 MAP Kinase Kinase Gene Family AT5G56580 70.0 1.4e-161 566.2
Car10g00666 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 5.2e-119 424.9
Car11g00592 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 57.6 8.3e-117 417.5
Car12g01289 . 26 365 MAP Kinase Kinase Gene Family AT5G56580 56.4 3.5e-107 385.6
Car18g00075 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 63.8 4.1e-104 375.2
Car01g00020 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.7e-76 282.7
Car13g00812 . 1 98 MAP Kinase Kinase Gene Family AT1G18350 68.4 2.3e-38 156.8
Car18g00075 . 1 305 MAP Kinase Kinase Gene Family AT1G73500 64.9 6.5e-110 394.4
Car01g00020 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.5e-77 287.0
Car13g00812 . 1 98 MAP Kinase Kinase Gene Family AT1G73500 73.5 7.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88570 PF00069 Pkinase 2.40E-60 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00020 Car_Chr01 FPKM 6.884851 8.838508 15.106239 16.299009 48.909142 45.078674 48.288445 19.105833 18.821457 18.818575