Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00020 ATGAGACCCCTTCAGCCGCCGCAGGGTGTAAATCCGGCCACCGATCGTCCTCGTCGCCGCCCGAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCTGTTCCCCTCCCTTTGCCTCCGACGTCTTCTAACGCCGCTCCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGTCCACCGGAGCCTCAGCCACAGCCTCAGCCGCAGAAGCATCAGGTTTTCAGCCTCGCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGCACCGTCTACAAAGTGATTCACCGTCCCACCGGCCGCGTCTATGCTCTGAAGGTCATTTATGGAAACCACGAGGACGCGGTTAGGCTTCAGATGTGCCGTGAGGTTGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTCCTTGAATACATGGATCGAGGCTCCCTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCTTATCTCCATAGCCGCCGCATCGTACATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCCGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGTTTTGGGGTTAGCATATTGGAATTCTACCTCGGACGGTTTCCTCTTGCCGTGGAGAGGCCTGGGGACTGGGCGAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACCGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCACTACTGGAACATGCGTTCATAGCGGGGAAAAATGGAGCGGCGAGTCAGTACCAGAATCAGCAAACTCATCACCAGAATCTTCGTCAACTATTACCTCCGCCGCCCCTTCGTCCTTCCAGCCTTTCTTGA 1122 54.9 MRPLQPPQGVNPATDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNAAPPPSTSQLHNGNRPPEPQPQPQPQKHQVFSLADFERVSRIGSGCGGTVYKVIHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFIAGKNGAASQYQNQQTHHQNLRQLLPPPPLRPSSLS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 111520 112641 - Carg04338-RA Car01g00020 140884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00020 373 MobiDBLite consensus disorder prediction 348 373 - -
Car01g00020 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Car01g00020 373 Pfam Protein kinase domain 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00020 373 MobiDBLite consensus disorder prediction 1 76 - -
Car01g00020 373 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Car01g00020 373 ProSiteProfiles Protein kinase domain profile. 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00020 Car-Chr1:111520 Car18g00075 Car-Chr18:394422 1.69E-96 dispersed
Car01g00020 Car-Chr1:111520 Car12g01289 Car-Chr12:11950390 2.94E-59 wgd
Car01g00020 Car-Chr1:111520 Car14g01085 Car-Chr14:9531660 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88570 PF00069 Pkinase 2.40E-60 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00020 K13413 - csv:101219669 630.172