Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00029 ATGAGTAATTGGTTGGGTTTCTCTCTCACTCCCCACCTCAAAATCCATGACGCCACCTCCGCCGACGACCAACACCCAAACCCCAGCAGCTTCCCGCCTCTCATGCCTCTCCGCTCCGACGGATCCCTCTGTATCGCCGCCGCACACGATTGGAGATCGTACGAGAATGAAATGAGTGCAAGGAATGAAGAGGAAAGTCCAAAGCTTGAGGATTTTTTGGGGAATTGTTATTCAAACTCACCGCCAAACGATCAGACTCATAATAACAACACCAACTTCATCCAGGCGAATACCAATAATAATTACCATTATCAGACGGATCATCACTCTTTAATTTCTAATAATGGTAATGCAATTTACAAGTCGTGGTTAGGTCCTACGACTTCGAGTCCCCAAAACGAGTGTGGGTTTCGATCTTTATCTCTTGGGATGAGCCCCAACTCGCATAACGACATCGTTTCATTGCCATCGCCGCCGCACATGGCGGTGGATTCCCGGAAACGACCGATGCCGGTAGGGAAGCCTCCGGTTAAAGAACCTGTTCCTAGGAAGTCCATTGATACTTTTGGACAAAGAACCTCCCAGTTTCGTGGTGTTACGAGACATAGATGGACAGGGAGATATGAAGCTCATTTGTGGGACAACAGCTGCAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGGTGGTTACGATAAGGAAGAAAAAGCAGCTCGAGCGTATGATTTAGCTGCACTTAAGTATTGGGGTCCAACCACACACATAAATTTTTCATTGAGCACTTACGAAAACGAGTTGGAAGAGATGAAGAACATGACCCGACAGGAGTTCGTAGCCAACTTGAGAAGGAAAAGCAGTGGATTCTCGAGAGGTGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGGAGGGTTGCAGGAAACAAGGATTTGTACCTTGGCACATTTAGTACACAAGAGGAGGCGGCGGAGGCCTATGACATAGCGGCCATCAAGTTCCGAGGGACGAGTGCAGTAACTAATTTCGACATTAGTAGGTATGACGTGAAGAGGATCTGTTCTAGCTCGACTCTTATTGCGAGCGACCTTGCGAAACGTTCCCCGTTGAAAGATGGAATTCCGTCGACGGCTGAGGAGTATAGTGCATGTGCTTCGCCAACGTCGTCGCAGCCTCTCTTGGCCATCACTGAGAATGGCGACGTCGATGAGAGCCACCATGAGTTGGTTGATATGGTTTGGTGCGACAATGGTGGTAAAGATGACGCTAATCAACAAGAGGAGAATGTGGGAAAGATGAACGACGACTTGAGTTTGATGGGTTCGAGGAATGAGACAGAGGCATCGAAGTGTTGTATGGTGCAGAACAACGGAGAGTTTGGGGTCGGGGTTGGGGGAGGCGAGTATTCACAAGGGTATTACTCAATGGAGGAAGCAAAATATGAAGATGGGAGGGATGAAAATAGGGAGGTGGAGAATGATGTAACATTGGCTCATCATCAGGTTCCAATGTTTGCTCTATGGAATGAATGA 1557 47.78 MSNWLGFSLTPHLKIHDATSADDQHPNPSSFPPLMPLRSDGSLCIAAAHDWRSYENEMSARNEEESPKLEDFLGNCYSNSPPNDQTHNNNTNFIQANTNNNYHYQTDHHSLISNNGNAIYKSWLGPTTSSPQNECGFRSLSLGMSPNSHNDIVSLPSPPHMAVDSRKRPMPVGKPPVKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFSLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGIPSTAEEYSACASPTSSQPLLAITENGDVDESHHELVDMVWCDNGGKDDANQQEENVGKMNDDLSLMGSRNETEASKCCMVQNNGEFGVGVGGGEYSQGYYSMEEAKYEDGRDENREVENDVTLAHHQVPMFALWNE 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 147113 149918 - Carg04329-RA Car01g00029 140893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00029 518 ProSiteProfiles AP2/ERF domain profile. 195 258 IPR001471 GO:0003700|GO:0006355
Car01g00029 518 MobiDBLite consensus disorder prediction 156 184 - -
Car01g00029 518 ProSiteProfiles AP2/ERF domain profile. 294 352 IPR001471 GO:0003700|GO:0006355
Car01g00029 518 Pfam AP2 domain 195 250 IPR001471 GO:0003700|GO:0006355
Car01g00029 518 Pfam AP2 domain 295 344 IPR001471 GO:0003700|GO:0006355
Car01g00029 518 Coils Coil 482 502 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00029 Car-Chr1:147113 Car05g00104 Car-Chr5:544015 5.87E-124 dispersed
Car03g00809 Car-Chr3:6661442 Car01g00029 Car-Chr1:147113 2.09E-81 dispersed
Car01g00029 Car-Chr1:147113 Car12g00555 Car-Chr12:3699394 3.07E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2765 PF00847 AP2 1.80E-09 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00029 K09285 - csv:101205762 759.599