Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00041 ATGGGAAACCAGAAGCAGAAGTGGACGCAGGAGGAGGAAGAGGCACTTTTGGCTGGCGTACAGAAGCACGGTCCAGGGAAGTGGAAGAACATTCTCAAGGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATCTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCCAGGACTCCCAAAGCTAAAGCTATTGTTGCTGCCTCAGTTTCTAACAACCAAAACTCTGCTCTTACTAAGTTTAATGCATCTGCTGATGCTGCAGGAGAAGATCCACCAAACAGCGCCCCACAGGATGGGAAAACTGTCCCAAGGTATCATACAATGATTTTTGAAGCTCTTTCAACCATAAAAGATTCAAATGGATGCGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAGGATGTCAGGCAACGAATGTCGCAATATACTATGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGACGCGGCGAAAGCAGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCGGAAGCTGTGAAGGAGGCAGAGAGAATAGCAAAGATGGCTGAAGATACAGATTCTATGCTACAGATTATAAAAGAGATGTTCTCGTGGGGAAATTGTTCTCTTGGCTTAGATAAATCGCTTGTAAGTTTAATGGCCAATCCAATCCTTCGCTGTTTTTGTAATCCGCATACAATAAATACAGAGGGGTGTGCGTTGGAACTACAACTATATTCGCTGCATTTAGAACTAAGTATGGCGGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTTTGACTCTAAGATGAATGAGTTACTTTCAGCTGATGGACAAGATTTCTTCACCTCTTATGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTGGTATATAGCATTATTCTTTTTTCGCCTTATGCTCAAAGTTATTTTTTGTCCTCTATTTATATTGTTTAATGATTAA 1203 41.98 MGNQKQKWTQEEEEALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRTPKAKAIVAASVSNNQNSALTKFNASADAAGEDPPNSAPQDGKTVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRMSQYTMGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMFSWGNCSLGLDKSLVSLMANPILRCFCNPHTINTEGCALELQLYSLHLELSMAGLAPEGSQFDARQFDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGWYIALFFFRLMLKVIFCPLFILFND 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 212081 218450 - Carg04317-RA Car01g00041 140905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00041 400 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g00041 400 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Car01g00041 400 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g00041 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car01g00041 400 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00041 K09422 MYBP; transcription factor MYB, plant - csv:101202785 459.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00041 Car14g01103 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00041 Car-Chr1:212081 Car07g00569 Car-Chr7:2884994 1.27E-25 dispersed
Car05g00361 Car-Chr5:2086514 Car01g00041 Car-Chr1:212081 1.20E-33 transposed
Car14g01104 Car-Chr14:9789328 Car01g00041 Car-Chr1:212081 6.80E-164 transposed
Car01g00041 Car-Chr1:212081 Car14g01103 Car-Chr14:9783385 4.23E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g136 . Blo06g00741 . Bda10g00864 Bpe06g00785 . . . Cmo08g00750 . Cma01g00052 Cma14g01252 Car01g00041 Car14g01103 Sed08g2596 . . Bhi01g02739 Tan04g2778 Cmetu04g3060 Lac12g2459 Hepe02g1516 . . Cla07g01320 Cam07g1175 Cec07g1507 Cco07g1466 Clacu07g1389 Cmu07g1367 Cre07g1748 . . . . . . Chy04g00666 . . . . . . . . . . Cmo01g00057 Cmo14g01286 . . . . Cpe02g01732 . . . . . . . . . . . . . . . Lsi07g00592 Csa03g04064 . Cme04g01226
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00417 . 1 336 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 8.1e-65 244.6
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 1.3e-62 237.3
Car07g00569 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.0 4.1e-61 232.3
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 53.5 6.6e-67 251.5
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 9.5e-66 247.7
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.8 2.9e-59 226.1
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 8.0e-57 218.0
Car14g01104 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 3.1e-69 259.2
Car01g00041 CST 1 274 Single Myb Histone (SMH) Gene Family AT1G17520 51.0 5.4e-66 248.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2767 PF00538 Linker_histone 2.00E-10 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00041 Car_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0