Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00041 ATGGGAAACCAGAAGCAGAAGTGGACGCAGGAGGAGGAAGAGGCACTTTTGGCTGGCGTACAGAAGCACGGTCCAGGGAAGTGGAAGAACATTCTCAAGGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATCTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCCAGGACTCCCAAAGCTAAAGCTATTGTTGCTGCCTCAGTTTCTAACAACCAAAACTCTGCTCTTACTAAGTTTAATGCATCTGCTGATGCTGCAGGAGAAGATCCACCAAACAGCGCCCCACAGGATGGGAAAACTGTCCCAAGGTATCATACAATGATTTTTGAAGCTCTTTCAACCATAAAAGATTCAAATGGATGCGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAGGATGTCAGGCAACGAATGTCGCAATATACTATGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGACGCGGCGAAAGCAGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCGGAAGCTGTGAAGGAGGCAGAGAGAATAGCAAAGATGGCTGAAGATACAGATTCTATGCTACAGATTATAAAAGAGATGTTCTCGTGGGGAAATTGTTCTCTTGGCTTAGATAAATCGCTTGTAAGTTTAATGGCCAATCCAATCCTTCGCTGTTTTTGTAATCCGCATACAATAAATACAGAGGGGTGTGCGTTGGAACTACAACTATATTCGCTGCATTTAGAACTAAGTATGGCGGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTTTGACTCTAAGATGAATGAGTTACTTTCAGCTGATGGACAAGATTTCTTCACCTCTTATGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTGGTATATAGCATTATTCTTTTTTCGCCTTATGCTCAAAGTTATTTTTTGTCCTCTATTTATATTGTTTAATGATTAA 1203 41.98 MGNQKQKWTQEEEEALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRTPKAKAIVAASVSNNQNSALTKFNASADAAGEDPPNSAPQDGKTVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRMSQYTMGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMFSWGNCSLGLDKSLVSLMANPILRCFCNPHTINTEGCALELQLYSLHLELSMAGLAPEGSQFDARQFDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGWYIALFFFRLMLKVIFCPLFILFND 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 212081 218450 - Carg04317-RA Car01g00041 140905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00041 400 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g00041 400 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Car01g00041 400 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g00041 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car01g00041 400 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00041 Car14g01103 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00041 Car-Chr1:212081 Car07g00569 Car-Chr7:2884994 1.27E-25 dispersed
Car05g00361 Car-Chr5:2086514 Car01g00041 Car-Chr1:212081 1.20E-33 transposed
Car14g01104 Car-Chr14:9789328 Car01g00041 Car-Chr1:212081 6.80E-164 transposed
Car01g00041 Car-Chr1:212081 Car14g01103 Car-Chr14:9783385 4.23E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2767 PF00538 Linker_histone 2.00E-10 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00041 K09422 - csv:101202785 459.529