Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00054 ATGACAGTTCAGGGAAAGCATAAGTTCTTCCATGGCACGCTCGAAGTTACCGTCTTCCATGCAACTACATACACACCGTCATCACCACTGGATTGTATCTTTTCTGGAGGAAAGCAAAGCTATGTGACCATCAAGATAAACAACATAGAGGTTGCTCGAACAAACCATGAATACGACCGTGTTTGGAACCAAACATTCCGAGTTCTATGTGCGCATCCATTGACATCTACCATCACCATTACAATGAGAACAACTCGTTCTGTATTGGGAAGATTCCAGATCCAAGCCCAACAGATTTTGAAAGAATCAAGTTTCATCAATGGATTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGTCCAGAGCTCAGACTTAGATTCATGCTATGGTTTCAACCGGCAGTATATGAACTAAGTTGGAAAAAGGTGCTGGAAAATGGAGAGTACAAGGGGCTGAGAAATGCAACGTTTCCTCTAAGGTCCAACTGTCATGTGACTCTATATCAAGATGCTCACCATGTCTCTACGTTTCAACCTCCGTTTCACGGTTCGAGCGCGCCAAGAAGGCTATGGGAAGATGTGTATAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGAGACCCTCAAACTCATATACCCTATGCCTTGGGAGTAAAGCTTGGTGAGTTGTTGAAGCAGAAGGCAGAGGAAGGAGTAGCAGTGAGACTAATGATATGGGACGACGAGACATCCCTTCCCATCATCAAGAATGCTGGGATAATGAAAACACATGATGAAGATGCTCGGGCATATTTCTCGAACTCGAAAGTTGTATGTAGGTTGTGCCCCAAATTACATCCTATGTCTCCACCAATTTTCTCTCATCATCAGAAGACCATAACAGTAGACGCTCAAACTCACATCAACGCAAGGAACAGGGAGATTATGAGTTTCATTGGGGGTCTAGATCTTTGTGATGGTCGCTATGACACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCCCACTGCTGTGATTTCTACCAAACGAGTATATCAGGAGCCAAGCTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCATGCTCGTGTAACAGGTGAAGCTGCTTGGGATATACTAACAAACTTTGAGCAACGATGGACTAAGCAATCAGATGCTTCGTTGCTAGTCCCAACAAGCATCTTACTAAAACTGATGCCCCCACTTGAATCAAACACAAACCCACAAAAGGATTGGAACGTACAAGTTTTTCGATCTATCGACCACTTGTCTGCCAGCCAAGTTTTCAGAAACTTGACGGTTGAACGTACCATCCACGAGGCATATGTCGAAGCTATCAGAAGAGCCGAGAGATTTATTTACATCGAAAACCAATATTTCATAGGAGGGTGTCACTTGTGGGACAAAGATCAACACTGCGGATGCACGAATTTAATACCGATCGAGATTGCGCTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAAGTTTGCAGTTTATGTAGTGATTCCAATGTGGCCAGAAGGGCCACCAGAGAGTGAATCAGTAGAGGATATGCTACATTGGACCAGGCAGACAATGACAATGATGTATAGATTGATTGGAGAAGCAATCCAAGAAACTGGGGAGAAGGCCCATCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAACAGAGAAGAAGAGAGAAAGTGGGACTTTGTTCCCCCTCACAGTCCACAACATGCAACAGAATACTGGAGTGCCCAACACCATAGAAGGTTTATGGTCTATGTCCATTCGAAGGTCATGATAGTGGACGATTTGTACATTCTGATCGGATCCGCAAACGTGAACCAAAGATCCATGGACGGAGAACGAGATACAGAGATAGCGATCGGATGCTACCAACTAGAAAACGACGGAAAAGAATTGCCAAATGGAAGAGACATTTCAACATTCCGCTTGTCGCTTTGGTACGAACATACTCAACGATTCGAAGAGGTGTTCTTAAACCCCGAAAACTTGCAATGCGTAGAAAGGGTTCGTTCAATAGCAGACGAATCATGGAAAATTTACAGTGGAGAAGAAGTTGCAGACATGAAAGGTGTTCATCTCGTAACGTACCCTGTGAAGGTAAAACAGGACGGATCGATTGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACTAAATGCCCCATTAAAGGAAGAAGATCAATGTTCTTGCCGCCCATTTTCACGACCTAA 2286 43.74 MTVQGKHKFFHGTLEVTVFHATTYTPSSPLDCIFSGGKQSYVTIKINNIEVARTNHEYDRVWNQTFRVLCAHPLTSTITITMRTTRSVLGRFQIQAQQILKESSFINGFFPLLMENGKPSPELRLRFMLWFQPAVYELSWKKVLENGEYKGLRNATFPLRSNCHVTLYQDAHHVSTFQPPFHGSSAPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDPQTHIPYALGVKLGELLKQKAEEGVAVRLMIWDDETSLPIIKNAGIMKTHDEDARAYFSNSKVVCRLCPKLHPMSPPIFSHHQKTITVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHARVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPPLESNTNPQKDWNVQVFRSIDHLSASQVFRNLTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKAREKFAVYVVIPMWPEGPPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEERKWDFVPPHSPQHATEYWSAQHHRRFMVYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQLENDGKELPNGRDISTFRLSLWYEHTQRFEEVFLNPENLQCVERVRSIADESWKIYSGEEVADMKGVHLVTYPVKVKQDGSIEDLEENGGHFPDTKCPIKGRRSMFLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 297088 300044 - Carg04304-RA Car01g00054 140918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00054 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Car01g00054 761 Pfam C2 domain 12 112 IPR000008 -
Car01g00054 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Car01g00054 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824
Car01g00054 761 Pfam Phospholipase D Active site motif 300 335 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00054 Car-Chr1:297088 Car01g00123 Car-Chr1:625607 0 dispersed
Car05g00963 Car-Chr5:9219198 Car01g00054 Car-Chr1:297088 1.44E-15 dispersed
Car01g00054 Car-Chr1:297088 Car08g00824 Car-Chr8:5496173 5.74E-176 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00054 K01115 - csv:101206396 1454.5