Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00056 ATGAGTCGAGAGCAGAAGCGGGGGAAGCAGGACAAGGGTTCTGATGATGTCCAGAAGGTGATTGTTGCTGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTTGTTCATATTGGAGATTGCATAACTCTGCTTGTTGTTGTCCCTTCTCAAACCTCTGGTAGAAAATTCTGGGGTTTTCCAAGATTTTCCGGTGACTGTGCCAGCGGTCAAAAGAAAGCTCACTCTGGGACAACCTCGGAGCTGAAGTATGATATTAGTGATACCTGCTCGCAGATGATCCTGCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCTGGGTCACCTAGTGGGGCTGTAACTGCAGAGGCTAAGAGAGTTCATGCTTCCTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAGAAATGCTGCATGGAAGAGTTGCAATGCAACATTGTGGTAATGAAGCGATCTCAGCCTAAAGTTCTTCGCTTGAACTTGGTTGGGTCTCGAAAAAAGGAACCACAAGTGCTCTCTCCCTTACCTTTTGATATAGATGAAGGGTCTGAAAGCCATCACAAGGAACATAATGATCCTCTGGATTTTATTCGAGGACCGGTTGTGACTCCCAGTAGCAGTCCAGAGTTGGGCACGCCTTTTACTGCGACGGAAGCTGGAACGTCGTCGGTGTCGAGCTCTGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGATACAAAGAAAGAGGAATTATTTGTTATCAAGGAAAATAAAGAAGTAGATGCAGCTAGTTCTGACTTAGATATTGAAAATTTATCTGTATCTTCAGGGAGCTTAAGATTCCAACCATGGATGACAGAATTTCTAAGTTCTTCTCATCTTCAATCCTCACAACACATAACTGGAAGGTCACAGAGATTTGATGATCTGAACCAAATGTCAACAAGAAAAGCTTTTCAACCAAAGTTTACGAAACTTGATCGAGAAGCTCGAATTGAAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGGGACGTTCGAGATGCAGTTTCGTTATCCAGGAACTCGCCACCAGGACCGCCTCCATTATGCTCAATATGTCAACACAAGGCACCAGTTTTTGGGAAGCCTCCAAGGTGGTACAGCTACGCTGAGCTTGAGCTCGCTACAGGTGGATTTTCACAAGCCAACTTTCTTGCAGAAGGGGGATATGGATCTGTTCACAGAGGGGTACTCCCGGACGGTCAGGTGGTTGCTGTCAAGCAGCACAAACTAGCTAGCTCTCAGGGAGACCATGAATTTTGTTCAGAGGTCGAAGTTCTTAGCTGTGCACAACATCGAAACGTTGTGATGTTGATTGGCTTTTGTATAGAGGAGAAAAAAAGGTTACTGGTTTATGAGTACATCTGCAATGGCTCATTGGATTCTCATTTATATGGACGCCAACAAGAGCCATTAGGATGGACTGCACGGCAGAAAATTGCCGTGGGAGCAGCGAGGGGGCTACGATATCTCCATGAAGAATGTAGAGTAGGTTGCATTGTTCACCGGGATATGCGGCCGAACAACATTCTTATCACCCATGATTTTGAACCACTGGTTGGAGATTTTGGCCTTGCGAGGTGGCAGCCTGATGGCGATACCGGCGTTGAGACAAGAGTTATTGGAACATTTGGGTATTTGGCTCCGGAGTATGCTCAAAGTGGCCAAATCACAGAGAAAGCTGATGTTTATTCCTTTGGGGTAGTACTGGTGGAGCTAATCACGGGAAGAAAAGCTGTAGACCTTGGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCACGCCCCCTGTTGGATGAACTTGTGATTGATGAACTGATTGATCCGAGGTTGGGGAATAGCTTCACAGAGCATGAGGTGTACTGCATGGTGCACGCCGCATCGTTATGCATCCGAAGGGATCCTAACGCCAGGCCTCGTATGTCACAGGTTTTACGGATTCTGGAGGGCGACCTCGTCGTGGATGCTAATTACTTGTCAACTCCGGGATACGATGTGGGAAATCGGAGTGGACGGATGTGGACCGAGCAGCAGCAGCAGCAGCAGCAAAACTACAGTGGGTCCTTATCAGAAGAGCCCATAGAGAGGTTGAATGAAAAGGTGTGTGTTGAGAGTTTAAGACCAAGTTACTGGGAAAGGGACAGCAGGACAGGGAGGACTTCAAGTGGAAGTGATTTGTAA 2265 45.92 MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVHIGDCITLLVVVPSQTSGRKFWGFPRFSGDCASGQKKAHSGTTSELKYDISDTCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVTAEAKRVHASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSRKKEPQVLSPLPFDIDEGSESHHKEHNDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKEVDAASSDLDIENLSVSSGSLRFQPWMTEFLSSSHLQSSQHITGRSQRFDDLNQMSTRKAFQPKFTKLDREARIEMSSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWYSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEEKKRLLVYEYICNGSLDSHLYGRQQEPLGWTARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLGRPKGQQCLTEWARPLLDELVIDELIDPRLGNSFTEHEVYCMVHAASLCIRRDPNARPRMSQVLRILEGDLVVDANYLSTPGYDVGNRSGRMWTEQQQQQQQNYSGSLSEEPIERLNEKVCVESLRPSYWERDSRTGRTSSGSDL 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 304231 308877 - Carg04302-RA Car01g00056 140920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00056 754 MobiDBLite consensus disorder prediction 697 719 - -
Car01g00056 754 Pfam Protein tyrosine and serine/threonine kinase 410 675 IPR001245 GO:0004672|GO:0006468
Car01g00056 754 MobiDBLite consensus disorder prediction 699 719 - -
Car01g00056 754 ProSiteProfiles Protein kinase domain profile. 406 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00056 754 ProSitePatterns Tyrosine protein kinases specific active-site signature. 527 539 IPR008266 GO:0004672|GO:0006468
Car01g00056 754 MobiDBLite consensus disorder prediction 220 254 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00056 Car14g01122 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00056 Car-Chr1:304231 Car15g00207 Car-Chr15:1142382 6.32E-98 dispersed
Car20g00910 Car-Chr20:9867795 Car01g00056 Car-Chr1:304231 1.36E-81 dispersed
Car04g01371 Car-Chr4:7951078 Car01g00056 Car-Chr1:304231 3.28E-94 transposed
Car04g02326 Car-Chr4:18745941 Car01g00056 Car-Chr1:304231 2.03E-29 transposed
Car09g00161 Car-Chr9:758697 Car01g00056 Car-Chr1:304231 4.61E-48 transposed
Car01g00056 Car-Chr1:304231 Car10g00638 Car-Chr10:3239659 3.74E-13 wgd
Car01g00056 Car-Chr1:304231 Car11g00565 Car-Chr11:3033635 0 wgd
Car01g00056 Car-Chr1:304231 Car14g01122 Car-Chr14:9909983 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88573 PF07714 PK_Tyr_Ser-Thr 8.20E-41 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00056 - - csv:101206876 1351.27