Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00074 ATGGGTTGTGTTCTGGGAAAGTGTTGTACTTGCAATCGCTACACGGCGTCTTCTGAAAGCGATACGGCCCAATTCTGTGATGCCTCGCCGTGTGGTTCACGAGGGAAACATATACTAACGGGAAGGTTATTGGAGTGTGTTCATGTGCCTTCTCACAACTACTATATGGAGTACTCGCTCCTGACCCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGGAAACCAAGATAGCGTCTGTGTTAGTACGAAAATTCGAGGTAACCCAAATATCCATTTCTTCGGTGTTTTTGATGGGCATGGTCAATACGGATCGGAGTGTTCGAATTTCGTTAAGGAAAGGGTTGTGCAGATACTATGTAAAGATTCAGCGTTGTCGCAAGATCCCGTTAGAGCCTATAATGCGGCCTTTTTTACCACGAATGATGAATTGCATAAGAGCAAGATCGATGATTCCTTGAGTGGCACAACTGCTATTACTGTTCTTGTTGTTGGAAATATGCTTTACGTTGCGAATGTGGGTGATTCGAGGGCTGTGATAGCTGTTAAAGATGGGAATCGAATTATTGCTAAGGACATGTCCAATGATCAAACACCTTTCAGGAAGGATGAATGCGAGAGAGTAAAGCTGGCCGGGGCTACTGTGATGACAATTGATCAAATTGAAGGGCATAAGGATCCGGGTATTCAGATATGGGGTGATGAGGAGAGCCAGGGAAATGATCCCCCTCGGCTGTGGTTGCCTAATAGCTTCTATCCTGGTACTGCATTCACTCGGAGTGTTGGAGATAGTACAGCCGAGAAGATTGGTGTCACTGCTATCCCTGAGATTTCAGTACTTCAGCTCACTCAAAACCATCTTTTCTTCGTTGTTGCAAGCGATGGAGTGTTCGAGTTCCTTACGAGTCAAGCAATTGTCGATATGGCCGCGAGGTACACCGATCCACGAGATGCCTGCGCTGCCATTGCTGGAGAGTCATACAAGCTATGGTTGAGGCATGAAAACCGGACAGATGATATAACAATCATCATTGTTCACATCAAAGGCATCTCTGATTCAGATGCTGTTGCAACTGCTGGGCTGAACGGGGTCCATTCAAGGCATAGAGTTATCGAACGGGGAGCCTCCGAGAGATCAGCCTTTGCTGGAAGTTCGGAGGCCTTTCGATCCAGCAGAAGTGATTTCTCAGATGCGTCAATCTCCCAGCGTCATGTGGGTTTGATGCACAGAAGCACAGCAATTGTTGTTCCATCTCCTTCTCAGCACCGACCATTGGAAGTGGCTTAA 1287 47.01 MGCVLGKCCTCNRYTASSESDTAQFCDASPCGSRGKHILTGRLLECVHVPSHNYYMEYSLLTQRGYYPDSPDKGNQDSVCVSTKIRGNPNIHFFGVFDGHGQYGSECSNFVKERVVQILCKDSALSQDPVRAYNAAFFTTNDELHKSKIDDSLSGTTAITVLVVGNMLYVANVGDSRAVIAVKDGNRIIAKDMSNDQTPFRKDECERVKLAGATVMTIDQIEGHKDPGIQIWGDEESQGNDPPRLWLPNSFYPGTAFTRSVGDSTAEKIGVTAIPEISVLQLTQNHLFFVVASDGVFEFLTSQAIVDMAARYTDPRDACAAIAGESYKLWLRHENRTDDITIIIVHIKGISDSDAVATAGLNGVHSRHRVIERGASERSAFAGSSEAFRSSRSDFSDASISQRHVGLMHRSTAIVVPSPSQHRPLEVA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 417749 419854 - Carg04284-RA Car01g00074 140938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00074 428 Pfam Protein phosphatase 2C 85 322 IPR001932 -
Car01g00074 428 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Car01g00074 428 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00074 Car-Chr1:417749 Car17g00262 Car-Chr17:1625720 1.09E-180 dispersed
Car01g00074 Car-Chr1:417749 Car14g01498 Car-Chr14:12409636 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00074 - - csv:101212684 662.914